XLOC_023631 (fam171a2b)


Basic Information

Item Value
gene id XLOC_023631
gene name fam171a2b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007135.7
NCBI id CM002908.2
chromosome length 42172926
location 36812640 ~ 36826504 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00046668
aggaacaatcaagagaagcaaaaaatatctatatttttatttgtaggtgtaatttaattgtattatcttttaatttctaaacatgtttggtgacttaaatattattttaataaatatatctgtttaataaatctattttgtttaaatgcaccaaatacaCTGCCTAAATtccctgagaaatggataaaaggatttattttcaaaatgggctgtactcaattatgctgagcattgtatattatatataaatataagcgCACCTCTGGGTCTGGCCGCGCGAGGCCGCTGTTTCTCCCTCAGCTGACAATGAGCGGCAATCAGCGCAGCATCCCCGCATCACACTGGAGGATGCTGGCAACCATgtctgaaaaaacacacacatatggctGACGAGCTGGAAACGGCGATGTAGCTTTGAAGATGCCATCTTTTCTCGTCTCTCGTTTTCTCTTCTTCCTCATTCTGTCCGTTTTTAAAGGCACAGCCGGCAAATCGCTCCCCGAGAGAGAAGCTGTGGAGGTGCAGGTGAGGGTGCAGGTGTTTGACGGTGGTGACCTTTCACCTTTGCCCAACGCCGCTCTTGCTGTTCATGGAAACCAGAGTCTGCTTGCGCAGAGCCGTGCAGGCAGCGACGGCGTGCAGGTGGTCAGCTTCACGTACCGCACGGGAACATGGGTAATCATAACAGCATCCCAGAGAGATTACCTCACCAGCTCAGTGCCATGGCACGCCAGCCGTCTGCCCTTGTATGCCTCGGTCAGCCTTTACCTGATGGCCCAGAAGCCCGGCACACTGATCCTATATGATGATGTCATCCAGGTGTTTCATGGCTCCCCAAGTGGGCGGAGCCAGCCGTGGCTGCAGGTTCCAAGGCGGAGCCTACAGTTTAACTCCTCCTACACAGAACTGACGGCAGTTTTAACAACAGCAAGAGAGCAGAATGAAATCAACTCCTTCCCTTACCCACTCGCTCTGGAACCAAACAACACAGGAGGAGAAAATGGCTGGACGGACCTGACAACGATAGCAGCAGTCAGTGCACAGTTGTTTGACCGCGAGGGCCGAGCTGTTGAAGTCAGTGAGCCTGTCCACATCTCTGTGCCTCTGCCGTCTGATACACACATACGATCTGCCAGCAGCATACCTGTATGGATGTACGACACCAAGACAGGACTTTGGGTTCGAAATGGAACAGGATTTATCATTCGAGAGGGATCTCAGCTAAGATGGGACTTCACTGCGTCCCAGCTGGGCTACTGGATCGCTGCCTTCCGAGCTTCATCAGGCTCAGGTTTGTCTCACCCAGGCCTGAGGGACATCACGGCCTACCACACCTTCTTCTTGCTGTCCATCCTGGGATCTCTCGCTCTGCTTGTGCTAGTCTTGCTCTGTGTCTTACTCTACTACTGCAGACGAAGGTGTCTGAAGCCCCGACGGCAGCAGAAACAGGTTCAAGTTCCATCTGCTTTGAATGGATCCAGGAAGGACCAAGGCACCTCCACGTCCCACTTGAACCTCATCTGCGGAGGCCATGTTGAATCTGCTGCCTCCAATGGCAACTTGGACGCCAATAAATCCGAGGGATCCCCATCCCATGCCTTCAAAAGTGCCCGAGATGAGTTTACCCGGCACATTCCTGCCCATAAGCTACGCCATTCCTCAAAGAACAAGCAATCCAAAGGAGCCCAAAGAAATCCCGAGAGTTTCCCCATGAAGGTGCATCAATCTACAGATACAAGCAATCTGGATAGCAATCTTCTACATGAAAACTACGGCCGCAACTACAGTTCTGACGACAAGGATCAAGACTATCGCCGCAGACATGTTGTCAATGATAACCGAGGCTACACATCCGACCCGCCTTCCCCACCACTTGTTGACAAGCCTCCAGAGTATTCACAGGTTTTGCAAGGGCCAGATCATCTCGCTCGTCCAACATCACTCAACACACAACCAGGTCAGATTATATTCTGCAGCTCATTAGATCAGATGAAGGAGAACATGTATCGTACTATGGTACCAACTCTTGTAATCCCAGCCCACTACATGAGGTTCTCCTCTGAGTTTGGTGGCTCAGATCAAGGTAAGGATGGAACAAATCAATCAGATCGAGATGGACAGAGTTCACAAGGTACCAGCAGTGGGATTCAAAGCCAAATCCATCAAGGACAGACCCCAGGATCAGGACATACCGATGGCCAGCAAGGTGCATCTCCTGCAGGCTCTGATGACAGCGTTTGGCCCTCCAGTGGTACACCAGCTCCGGTCCACATTCCAGTTTTATTCAATGACTCCACGATTTCACAGATGAACGGAGAGCTGCAAGCACTTACAGAGAAGAAGCTTCTGGAACTGGGGGTGAAGCAGCATCCTCGGGCATGGTTCATCTCTCTTGACGGACGCGCCAATGCTCACGTACGTCACTCATACATTGACGTAGGTGCTGATCACGGCCATAGTGGAACACACAGTGGAAACCACAGCGCCCAAAGCACCTTGAGTGCCCCAGCTGGGAGTAGTAAGGACCGAAGCATTGATGCAAGTCTACAAGACACCCAACATGATCGCAAATCTGCATCTGGTCGCAAGACCAAAGAGGAGCACCATGGAAGCAGCCGTAAGGGGCATGGAGGAAGCAGCTTTGGTGGAGGGAAACACTACTCCAAACCTGCCTACCATGACCCGCTTGACCTAAGTGGAGGGGTGAGTCGGATGGGGGCGAGTTCGCCATTGGAAAACCCTCTAACGCCTCTTTTGGATGATGGTCCCGAAGAGCCAAGGGGGTCTTCAATGCCGAGAAGGGGTCGAAGCAGGGGGAACAGCTCACGTAGTAGCAACAGCGAAACGCAGCGTGACTCCGTTACCAGCCCTGAAGATGACAATGATCTTGATGACAAGGAGGAGAACAAGAAGAGCCCCTGGCAGCGTATTGAAGAGCGCCCCCTCATGGTGTTTCATCCGAAGAAGTAGAGCAAGAAAATCAATCCCAACAGCTGCCTTGACCGATTAGCCAAACTAGAGATGTGTTCAAATTGAAGTTTCACTCAACTATATTCAAAGGATGACTATCTGTGTCTTTATAGTTTGATGGACATTTCACATAAGATTGTTATGCCGTTGGATTTATTTTTGGCTTTCTATGACAACAGACTTCCACTGATCAATTTGA

Function

symbol description
fam171a2b Predicted to be located in membrane. Predicted to be integral component of membrane.

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000079656

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00046668 True 3169 mRNA 0.49 8 36812640 36826504

Neighbor

gene id symbol gene type direction distance location
XLOC_023630 dcakd coding downstream 9749 36798558 ~ 36802891 (-)
XLOC_023629 si:ch73-334d15.1 coding downstream 84718 36721341 ~ 36727922 (-)
XLOC_023628 NA coding downstream 113633 36689295 ~ 36699007 (-)
XLOC_023627 ccr10 coding downstream 132379 36673686 ~ 36680261 (-)
XLOC_023626 CABZ01055365.1 coding downstream 218764 36581016 ~ 36593876 (-)
XLOC_023632 NA coding upstream 46371 36872875 ~ 36879127 (-)
XLOC_023633 dnaaf3l coding upstream 76668 36903172 ~ 36910224 (-)
XLOC_023634 dnaaf3 coding upstream 168791 36995295 ~ 37003577 (-)
XLOC_023635 NA coding upstream 220090 37046594 ~ 37049911 (-)
XLOC_023636 NA coding upstream 243179 37069683 ~ 37076817 (-)
XLOC_023665 dre-mir-735 misc upstream 1351457 38177961 ~ 38178027 (-)
XLOC_023625 NA non-coding downstream 233173 36574093 ~ 36579467 (-)
XLOC_023621 NA non-coding downstream 384859 36275575 ~ 36427781 (-)
XLOC_023624 NA non-coding downstream 445874 36364436 ~ 36366766 (-)
XLOC_023613 NA non-coding downstream 765448 36046699 ~ 36047192 (-)
XLOC_023637 NA non-coding upstream 343813 37170317 ~ 37170924 (-)
XLOC_023641 NA non-coding upstream 462964 37289468 ~ 37295101 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000329_00061244_00068216 NA coding CI01000329 null 61063 ~ 68216 (-)