XLOC_023625


Basic Information

Item Value
gene id XLOC_023625
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007135.7
NCBI id CM002908.2
chromosome length 42172926
location 36574093 ~ 36579467 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00047245
ACTGTAAAACTGTGTGTACTGTTTTACActgttcataaataaataaaaaaaactgcatggtAAGACCGTCATAGAAGATATTCACTTTAATAATCACAAAAACAGCACAAGAACATTCAAAACCAACAGTCTCTTGCACATACGTACACAACCAGACGAGGGTTTCTCAACATTAAAACAACGTCTGCGTTAAAACATCTCCATATAGATAATATTTCTAGTGGTCAACACTGCATTCACACTGTAATCCTTATGTTatcacaagaaaaacaaaaaaaatttaacctGGTCGAATTTTTTATGATGGACGAAAGTTTTGTAGGCATCAATAAGATTAACACAACGTgaagtcaaattttttttttaacatgtgaaaattCCGAACGAAAACTTTGCATTCAGTGTGCTATAACCTTTACACTAGACATttcctctaaaaccaggctgatccCATGAGGAAACGTTactattttatgtttatgtaattctgacgagttcagtcgtacgaaaatgtacgattttaaaaaggaggtgtggaaCCCAAGCATCATTGGGgcatgagcaaatcgtactgaatTGTACGATTGAGATGtacgtatgaattcatacaaattagccactaaatcaaagttactaattgccgtgagattgtgttggaaaaatgAGCACATACTATACATCTAACAAAGCCAAAAACtgtttacagtaaatatttaaaGCTGTAAATAGTTTATGACAGACAAAAGTTTCATAGACATCAATCCGATAAACACAACATAaggttgaattaatttttttacatgtgaAAATTCCGATCGGAAATTTCACATTCAGTGTGCTATAACCTTTATACTAGACATTTCCTGTAAAACCAggctgatctcacaaggaaacataacttttttacatttagtcagtTAAGCAGCTAATTCtgacgagttcagtcatacgaaaatgtacgattttaaaaaggaggggtGGAACCCAAcgatatgaattcatacaaattagccactaaatcaaagttacgaattgccgtgagatcgtGTTGGAAAAATGAGCACATACTATACATCAAACAAAGCCAAAACTGTTTACAGTAAACATTTAAAGCTGTAAATTAGTactaaactaaatatttattttgaatgagacaaaacattttaaaagtctgtcaTGAAAATATGTAAATACTTTTAATACTCTTGATAGTTTAATTTCTTTTATTCTTCAAACGATTAAGGCCCGttcacaccgggacgctttttgcttgcgtttttaCATCtagtttaacgcctcgtgactaaataaagggcgtcaatgtgatcgtgcacaatAACGTGCAAAACGCCAGAtgtaaaagtgtcatttttaaagaaacgcctcatgcttgtttttttgttttgatgcgccACGTCAAAActttctccaccaatcaggttgaCACTTTCGTTCACGtacacggagctgctgaagttacagtaaacagcacttggaggcgctcaagcgcaaaactgtccaTACGAGTGCACattgaagatgcccagaggcgatgtgaacgtggagctgcttattgcactggtgaacaataatcatgtCTTCATGGCTAGAGCTGGAACTGTTACTTGAACCACCCATTACCACCCACTAACAACAAGAGTGTCAACTTTCTGTCTTCTTTAATGTTACAAGAGGGTGTTAGAAGCTTacagttgtgtagcgccatctaacgtcaaggagtgattttgcatactcttctgctcgacgccagtgaaaatcgcttgggtttgaatctaGAAAAACATCTCGAAAAACGCTGAtgataaacgcaaatgaaaagcatcccggtgtgtacAAACCTTAACTGTACATAAACTACTGAAAACTAGCCTTGTCTAATTTGTGTATATACCCTCAAAAAATGACgtttactgcttgttcaaactacttatttaaaatgagctgaaacaactcaattcttgagttttttgACCGTCATAGAAGATATTCACTTTAATAATCACAAAAACAGCACAAGAACATTCAAAACCAACGTCTCTTGCACATACGTACACAACCAGACGAGGGTTTCTCAACATTAAAACAACGTCTGCGTTAAAACATCTCCATATAGATAATATTTCTAGTGGTCAACACTGCATTCACACTGTAATCCTTATGTTATCACAAGAAGTTGCGGatagttttatatatacattCTAGATGTTGCATTAATGAAAAAATGGGctcgtgttttttttattattattattacagatcaGACAACAGTGAAAGGATCCGATTGACCCATCTACTCACACACAGCtatattcattaataaaaaaggCGTCTTTATGAATACAGAAATCCATCTATCTTACACTTGTAAACAGAACGTACAGAGAGAGGATTCTGCATGCACACTGTCACATGCACAGCTCTTTCAGTAGAAAACAAAAGCTTACAAAAAATACCCTAAATCAACATACTTTATGCATGATCGTACAGTTTATATACATGTACAGTACACAGTTCTTCTGTTCTTTTgaatatatgcatttatatttatatatattatatatatttatattttggagATGTATCATTGTGTAACACAGCATATGGTGCTTGAGTCTATTCTACTTCAGTTTAAGACTTGAAAATAAAGTTATGAGGTATGTTTGTGATTTACACAACCACCAAAACCAGACTAGAGCTGCTTGTTTTTGTATATCGGATCTATAAATACTGTCTTTTTATTtcgggatgcaccgatatggatttatgagtgataccgataaccgatatatAAGccgataaatatacatttttatgcatGAACAAAAAGTTCACTGTATGTGTTTGCCTTTTGTTTATGCAATCATGcagaaaaatgtatatttatcgaCTAATATTTTGGTTATGCAAAAATTATATAGAACTGATCTCTGAACATTATTAATTAACTATTATTGTCTATGGCCAACTTTCttttatataaatgaaataaaatataaccaaaatcaaaatatcagttaaataaataaaaagtggcaCTTGACAAGCATGTGAAGTGGTTCAACCAgcggaaataataaataatttatcggcttaaagatattggTCTAATTTTATTATCggataacaataacattaaaaataacattgacaataaatgctcattttttatGTTATCATAATCTGTTAATAAAATTAGGATAGTTGATTAATAAAGTTAAGAGATCAGTCCAAAGTTTTCTAattgtaaagttttaaaataaagtctGTGTTACCGATAACCGACATTTTGGATAGCCGATATATTAGCCGATAATGAAAAAAGCTAAACACAATCATGTTCACTGTATGTGTTTGCCTGTTGTTTATGTGATAATGGAGAAAAATTTACAATTGTCAGCTAATATATCAGCTATTCAAAACTTATCGGTTATATTATCACTGATAATATTTTGAAACTTAAGAGAAGTTTGAACTGACCTCTGAACTTTATTAATCAATTATCTTAATTTTGTAATCAGATAACAAAAAATGGCATCGTTATTCAATAACAAAATTAGGCCAAATAAAGgccaaaactttcttttatataaacaatttttttattttatataaataattatttactgtctgacgaaaaaaaaaaaactatgaataaAGTAACCAAGTAACTAAACATTAACCACAACCAAAATATcggtaaaataattaaaacgtGCTGGGCAACAAACATGTGAAGTGGTTTAACTAGaggaaataatacattaatttatcggcttaaagatatcggccaaATTTTGTTATCGGATAATAATGCTATTTTGAATGTTATTTGATAACAAAATTAAGACATTTGATTAATAAAGTTTAGAGATCAGTTCAAACCTTACTGAAGCtaaagttttcaaataaaatgagcGATACCGATAGCCGATATGTTTTGGATAGCCGATATACTGTACTAGCAGATAAAAAAAGCTAAACACAATCATGTTGACTGTACGTGTTTGCCTTTTGTTAATGCAATCGTGcagaaaagtgtgaaaattttatatttacataattgtCGTCTAATATATCGGCTAATCAAAacttatcggttatcggtatcacaggatttattttaaaactttagtaactaaacattaaaaaaaatctaaatatcagtaaaataattaaaaagtgctGGGCAACTAGCATGTGAGGTGGTTTAACTAGAGAAATAATACATCATTTATCGGCTTAAAAATATTGGCCTTTATTGGATAGCAATGCTATTTTACTGTTATCTGATGATAGAATTAGGATATTTGATTAATAAAGTTCAGAGACCAGTTCAAGCTTTTCTGaagttaaagttttaaaataaaatcagcgaTACCAATAACAGATATATTTTAAACAGCCGATATATAAGccgataaatatacattttttacagttttcggCATGATCACATAAATAAAAGGCAAACACATACAGTAGATATCGATACAGCGCATCCCTAATTTATATTTGTGAAAAATAGTGGCAGTGGGGCAGATCTATACAAACCCTTGGCATTCATTACTGTATATATGAATGAGATTATTGAGAAAACAGTCTCTATAATGCGTTCCAGAGACACAAAGTGCTTCACGCGTACATTAAAATGTGCTGTAAGTAACAAAATATATGCttctaaaacaaacacacagacaaccGACTGAATTTGTACAGTATTTGAGCACAGGTTTCTTTCTTGGTGAGATCAGACGTGTACTTCATCTTAGCTTAGCAACAAATTCTGACCTTTTTTtagtataaaaatacaaaagcTCATCTGGTATAAAATATCTAgcttataattaataaatatttaccaaGTTGTTTTTGTCAGTCGCTCAAAGAGTTTTGCTATTGCACGTGTAGTTGTGCTAAAGATCTTTATTACGATTCAGATTAGTTAAACACAGTTTTATGATTTGCATTTATGATACTTTATAAAACTGAGCCAAATTACAGATCAGATTAAGGGTGAATCATCCGTCCAGAACATGATGCAGTTATATTTCATGACAAAATAATGAGAgagaaattaattttattttgtgtaaagaAAATTCTACTTAGTTTGTGTAGTTATGTTTtattgtcaatatatatatatatatatata

Function

GO:

id name namespace
GO:0048731 system development biological_process
GO:0048468 cell development biological_process
GO:0043010 camera-type eye development biological_process
GO:0030154 cell differentiation biological_process
GO:0030182 neuron differentiation biological_process
GO:0007275 multicellular organism development biological_process
GO:0050953 sensory perception of light stimulus biological_process
GO:0002088 lens development in camera-type eye biological_process
GO:0048856 anatomical structure development biological_process
GO:0007601 visual perception biological_process
GO:0048666 neuron development biological_process
GO:0007399 nervous system development biological_process
GO:0032501 multicellular organismal process biological_process
GO:0032502 developmental process biological_process
GO:0001654 eye development biological_process
GO:0022008 neurogenesis biological_process
GO:0048699 generation of neurons biological_process
GO:0150063 visual system development biological_process
GO:1990351 transporter complex cellular_component
GO:0034702 ion channel complex cellular_component
GO:0034703 cation channel complex cellular_component
GO:0099080 supramolecular complex cellular_component
GO:0099081 supramolecular polymer cellular_component
GO:0099512 supramolecular fiber cellular_component
GO:1902495 transmembrane transporter complex cellular_component
GO:0005212 structural constituent of eye lens molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00047245 True 5176 lncRNA 0.32 2 36574093 36579467

Neighbor

gene id symbol gene type direction distance location
XLOC_023621 NA coding downstream 146312 36275575 ~ 36427781 (-)
XLOC_023624 NA coding downstream 207327 36364436 ~ 36366766 (-)
XLOC_023623 si:ch211-40k21.9 coding downstream 236698 36331032 ~ 36337395 (-)
XLOC_023622 naglu coding downstream 257989 36303637 ~ 36316104 (-)
XLOC_023620 si:ch211-40k21.5 coding downstream 302712 36253255 ~ 36271381 (-)
XLOC_023626 CABZ01055365.1 coding upstream 1549 36581016 ~ 36593876 (-)
XLOC_023627 ccr10 coding upstream 94219 36673686 ~ 36680261 (-)
XLOC_023628 NA coding upstream 109828 36689295 ~ 36699007 (-)
XLOC_023629 si:ch73-334d15.1 coding upstream 141874 36721341 ~ 36727922 (-)
XLOC_023630 dcakd coding upstream 219091 36798558 ~ 36802891 (-)
XLOC_023665 dre-mir-735 misc upstream 1598494 38177961 ~ 38178027 (-)
XLOC_023613 NA non-coding downstream 526901 36046699 ~ 36047192 (-)
XLOC_023612 NA non-coding downstream 559363 35998439 ~ 36014730 (-)
XLOC_023611 NA non-coding downstream 577843 35974819 ~ 35996250 (-)
XLOC_023632 NA non-coding upstream 293408 36872875 ~ 36879127 (-)
XLOC_023635 NA non-coding upstream 467127 37046594 ~ 37049911 (-)
XLOC_023636 NA non-coding upstream 490216 37069683 ~ 37076817 (-)
XLOC_023637 NA non-coding upstream 590850 37170317 ~ 37170924 (-)

Expression


Co-expression Network