XLOC_023627 (ccr10)


Basic Information

Item Value
gene id XLOC_023627
gene name ccr10
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007135.7
NCBI id CM002908.2
chromosome length 42172926
location 36673686 ~ 36680261 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00046664
CGAAGACAAAAAGAGATTGACAGAGAGCAGAACATCAGAAAAGCTCAGATACAAACCACAGAGGACAGAATTACAGACAAGACAGCCTGAAGACCTGCGCTCACAGGTATGGGGAGCTTTGATCTTACCACAGAAGATTATAGTCTAAAttacgacgatgatgatgattaCAACTTCACTACAGATCCATCCGCCTTCTTTGGTAAAGAGCTCTGCGAGGCCAGTCCAGAGCAGGAGCGCAACATTACCATAGTCCAGACCACAGCCTTCCTGGTGGTCTTCGTCTTAGGCGTGATTGGAAACGGCCTGGTCATTGCCACCTTCGCTCTGTACCGCCGTCTCCGTCTGCGCTGTATGACCGATGTCTTCCTCTTCTTCCTGGCTCTGTCCGACATGCTGCTTCTGCTGACGCTCCCACTGCAAACAGTAGAAACTCTGATCGGCAGCTGGGAGTTCGGAGAGCCCATGTGCAAACTAAACCGTGGCATGTACGCAATCAACACCTACAGCGGCCTTCTGTTATTAGCGTGCATTAGCATCGATCGCTATTTAGTAGTGGTGTGCACTCGATCTATGAGGAAGAGGAGCTCTGGTACGCTGTTCTACAGTGTGCTCTCTGCACTTAGCATTGCTGTAATCTCAATCATGTTCAGTCTTCCAGATCTGAGCTTCAGTTCTGTGGACAACGTCTTGAATTCAAACCTGAGCTCATGTGATATGAAAGTCAGCGAAGTCAAGTGGAAACTGTGGGCCCAAATTGCGAAGATCGCAGGATTCTGCATCCCATGCATCACGATGATCGTGTGTTACGGTGCAATCGGACACGTTCTGATACACACTGGAGGAAAAGGCTGGCGTAGACAGAGAACTTTATGGTTGATGGCACTTTTGGTGGTGCTCTTTCTGCTTTTCCAGCTGCCCTACACTGTAGTGTTACTGATTAAAATATCCACACCAACACCAACACTCTGCAGTGATTGGACCACGCTGCACATCATGGAAATCGTGACCCGAAATCTGGCCTACGTGAGGTGCTGCTTGAACCCTCTGCTTTATGCGCTGGTTGGCGTTCGCTTCAGGAATGACATTATACGGTTGTTGACGGATGCtgggtgtgtgtgtaagtgcGTGTCTCAAAAAGCGCCTCATCTTGGCAATGGAAGCTCCATTACTCCGTCTTCTCCAGCTCCGACTACACTTACACACATTCCCTCTACCTATCAGCCTGGCAAGAACACGTCTGCACCAGATACACCTGCTGCGAACACAGCGCAAACGTTCTTCTTCCCCACACCGGTGTCTGGGAAAGTTACTTCAGTTATAAGCTGGTGTCATCAGATCATCTAACATGAATCATTACTTATATCAGTGGTACCCAAAGGGGGGGGTCGCAGCCCGGGACAATGACAGGGGgtgtcgcttggtgatttccaaaagtcaaataaactttattaaactattagaattaccatattttaaccaTAATAACCACTTTGAGAATGATCTTAAGTgatggtctccaaaattaaactaaCAGTAgacttgtgctgtaaacattgtgtcatttccaaatatttcctaaatgatttttaacagggcaaggaaattttcacagtatgtctgatgatattttttcttctggtgaaagtcttatttgttttatttcggctagaatgaaagcagtttttaattttttaaaactcatttttgggacaaattattagcccctttaagctaattttttttgataatctacagaacaaaccatcattacacaataacttgcctaattaccctaacctgactagttaacctaattaacctagttaagcctttaaatgtcactttaagctgtatagaagtgttttaaaaaatatctagtcaaatattatttactgtcatcatggcaaagataaaataaatcagttattagaattaagtttttaaaactattatgtttagaaatgtgttgaaaaaaattctctctcttaaccagaaattggggggaaaaaataaacaggagggctaataattatgacctcaactgtatgtatatatttatatgcaaatAAGCTTCCAGTAGTGACTCTATGTGCATAAAAGATCAGTATTCTGTATTATTCACAATTAGCAGCATGGAAAGGAATAGTCTTTGCTTTTTTGTaatatgcagtttttaaattaatcatgTTTTACTCAAACTCAAATGGTTCAATACTTTGagcttttttattctgttgaacacaaaagaagacattttaaagactgCTGAAAACTtgtaccattgacttccatagtgggaaaaacaaataccttggaaatcaatgcttacaggtttctagcattattcaaaatatcttctcttgtgttcaacagtagaaagactAAGGGCTTTAGAACAAGTGAATGGTAagaaaatgatgacaattttcagttttgggtgaactgtccctttgatTTTTGTTTACTGCTGGTCTAATcatgtatatcctgtaaatataATGTGTCCactgtttatgttttaataaagtactttttttttctttacaa

Function

symbol description
ccr10 Predicted to enable C-C chemokine binding activity and C-C chemokine receptor activity. Predicted to be involved in several processes, including calcium-mediated signaling; cell chemotaxis; and positive regulation of cytosolic calcium ion concentration. Predicted to act upstream of or within G protein-coupled receptor signaling pathway and chemotaxis. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in external side of plasma membrane. Is expressed in female organism. Orthologous to human CCR10 (C-C motif chemokine receptor 10).

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0007204 positive regulation of cytosolic calcium ion concentration biological_process
GO:0006935 chemotaxis biological_process
GO:0006955 immune response biological_process
GO:0019722 calcium-mediated signaling biological_process
GO:0007165 signal transduction biological_process
GO:0060326 cell chemotaxis biological_process
GO:0009897 external side of plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0016493 C-C chemokine receptor activity molecular_function
GO:0004930 G protein-coupled receptor activity molecular_function
GO:0019956 chemokine binding molecular_function
GO:0019957 C-C chemokine binding molecular_function

KEGG:

id description
ko04060 Cytokine-cytokine receptor interaction
ko04061 Viral protein interaction with cytokine and cytokine receptor
ko04672 Intestinal immune network for IgA production
ko04062 Chemokine signaling pathway
ko04030 G protein-coupled receptors
ko04050 Cytokine receptors

ZFIN:

id description
ZDB-GENE-040718-424 Predicted to enable C-C chemokine binding activity and C-C chemokine receptor activity. Predicted to be involved in several processes, including calcium-mediated signaling; cell chemotaxis; and positive regulation of cytosolic calcium ion concentration. Predicted to act upstream of or within G protein-coupled receptor signaling pathway and chemotaxis. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in external side of plasma membrane. Is expressed in female organism. Orthologous to human CCR10 (C-C motif chemokine receptor 10).

Ensembl:

ensembl_id ENSDARG00000040643

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00046664 True 2550 mRNA 0.40 2 36673686 36680261

Neighbor

gene id symbol gene type direction distance location
XLOC_023626 CABZ01055365.1 coding downstream 79810 36581016 ~ 36593876 (-)
XLOC_023625 NA coding downstream 94219 36574093 ~ 36579467 (-)
XLOC_023621 NA coding downstream 245905 36275575 ~ 36427781 (-)
XLOC_023628 NA coding upstream 9034 36689295 ~ 36699007 (-)
XLOC_023629 si:ch73-334d15.1 coding upstream 41080 36721341 ~ 36727922 (-)
XLOC_023630 dcakd coding upstream 118297 36798558 ~ 36802891 (-)
XLOC_023631 fam171a2b coding upstream 132379 36812640 ~ 36826504 (-)
XLOC_023632 NA coding upstream 192614 36872875 ~ 36879127 (-)
XLOC_023665 dre-mir-735 misc upstream 1497700 38177961 ~ 38178027 (-)
XLOC_023624 NA non-coding downstream 306920 36364436 ~ 36366766 (-)
XLOC_023613 NA non-coding downstream 626494 36046699 ~ 36047192 (-)
XLOC_023612 NA non-coding downstream 658956 35998439 ~ 36014730 (-)
XLOC_023635 NA non-coding upstream 366333 37046594 ~ 37049911 (-)
XLOC_023636 NA non-coding upstream 389422 37069683 ~ 37076817 (-)
XLOC_023637 NA non-coding upstream 490056 37170317 ~ 37170924 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000329_00007068_00008311 NA coding CI01000329 null 7036 ~ 8311 (-)