XLOC_023623 (si:ch211-40k21.9)


Basic Information

Item Value
gene id XLOC_023623
gene name si:ch211-40k21.9
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007135.7
NCBI id CM002908.2
chromosome length 42172926
location 36331032 ~ 36337395 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00046662
AGAAAGGTATCCACTGCTTGTACAGACCACTGGAGGTCTGTCATCTCATACAGCAGGTGTCAGTAATGGGCTGTTTACGCCTGCGCACAGCCGCCAGAAGAAAGACAGAagttgttgtgttgttgttgcCCTCACGAaggttttcatgcctaaacatgTCGTGTTCAGCTTTGAGCTGTAAAAATCGACCGTCACCAGGGACTGGCATAAGTTTTCATCGCTTCCCATTAGACGATAAGGACCGGCTGCAGAAATGGCTGCTGAATCTCAGACGGGACAATTTCCAGCCGTCTCCATCTGCGCGCATATGTTCGCAACACTTCGAAGACAGCTGCTTCTTCACGAACAATCACGGGAAACTGTGCCTTTCCAAAAGCGCCGTCCCTACCTTATTTTACTACCCCATTTCTTTTCGCTCATGGCGTAAATACTGGTCAAAGCGCATGGTTGTTAGTGAGGAGGAGAAATCCGGTGATGGTTCTAGGGGCACTTTACATGCTGTAGAGACTACAGATGACCACCATAAACCAGAAGCCACAGCAGCTTGTTTCGGGACCCCACAAACCCTGCTTAAAACTGAGCCCAGGAGCAGGTTTGTGGAGGTGGATGTTATCTTGAATGAGTCtataaaagaagaagaagatgatgatatTGGATTAGATATGCCGGACACTAATGTGAGCCCAGTGATTTACCCCAGCGAGGTTTGTGTGGTCGCAGTTCGACAGGATCACTGCTATTATTCCAGTTCTTCAAACACAGATGGGACAAACGCAGCAGGGAATCAGGAGAGCGAATCGGCGGAGATGCTTCGGCACAAACTGCATGTGGTTTTGAGCAAGATTAAAGTCTTCAGGAAAACCATGAAGATCAAGAACCAAATGATCAGACGCCTGAAGAGCAGAGTGCTGTCGCTGAAGGCCAACGTGAAGACTGAAAGATTGCAGAGAGAGAAAATGCAAGTTACACTGAGCAAGTTGCAGAAGGACCTAGATTGTCGACTCCAGCCTAAACCAAAGAGTCCAGACCTGTGAACAAAACACTAACAAAACTAATTTATACTGGACTCTATAAAGCTGAAAAGTCTCCGATGAGGAGATTCTGCTTTTCCATTTGGTGGCTCTTGCTGAGGAAAATACATTTACATCCTGTAAGCACTTCAAATGGTTGGGAAAAGATTTTAGGTTCTTCATTGTTTGGTGAAAGGAAACATGCTGTAGTTTTGTTGACTCAATGGTGCGCAGTATGCTCTACATCCACTTTTATATTGTACAGTTAGTTGTTTTCATAATAAATATTTGACGTCTTGattttttcatcatttataaTCAGTTAA

Function

symbol description
si:ch211-40k21.9 Predicted to enable metal ion binding activity and sequence-specific DNA binding activity. Predicted to be located in nucleoplasm.

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0005575 cellular_component cellular_component
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-131122-64 Predicted to enable metal ion binding activity and sequence-specific DNA binding activity. Predicted to be located in nucleoplasm.

Ensembl:

ensembl_id ENSDARG00000097546

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00046662 True 1336 mRNA 0.45 3 36331032 36337395

Neighbor

gene id symbol gene type direction distance location
XLOC_023622 naglu coding downstream 14928 36303637 ~ 36316104 (-)
XLOC_023620 si:ch211-40k21.5 coding downstream 59651 36253255 ~ 36271381 (-)
XLOC_023619 tmem241 coding downstream 92978 36231628 ~ 36238054 (-)
XLOC_023618 tmem241 coding downstream 100721 36227074 ~ 36230311 (-)
XLOC_023617 esco1 coding downstream 134955 36177388 ~ 36196077 (-)
XLOC_023624 NA coding upstream 27041 36364436 ~ 36366766 (-)
XLOC_023625 NA coding upstream 236698 36574093 ~ 36579467 (-)
XLOC_023626 CABZ01055365.1 coding upstream 243621 36581016 ~ 36593876 (-)
XLOC_023627 ccr10 coding upstream 336291 36673686 ~ 36680261 (-)
XLOC_023628 NA coding upstream 351900 36689295 ~ 36699007 (-)
XLOC_023665 dre-mir-735 misc upstream 1840566 38177961 ~ 38178027 (-)
XLOC_023613 NA non-coding downstream 283840 36046699 ~ 36047192 (-)
XLOC_023612 NA non-coding downstream 316302 35998439 ~ 36014730 (-)
XLOC_023611 NA non-coding downstream 334782 35974819 ~ 35996250 (-)
XLOC_023610 NA non-coding downstream 408643 35878761 ~ 35922389 (-)
XLOC_023608 NA non-coding downstream 606656 35709567 ~ 35724376 (-)
XLOC_023632 NA non-coding upstream 535480 36872875 ~ 36879127 (-)
XLOC_023635 NA non-coding upstream 709199 37046594 ~ 37049911 (-)

Expression


Co-expression Network