XLOC_023659 (crp3)


Basic Information

Item Value
gene id XLOC_023659
gene name crp3
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007135.7
NCBI id CM002908.2
chromosome length 42172926
location 38092608 ~ 38097305 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00046696
aaaacCTGCTGAATCGGACTTGGAGCAAgatgttggttttgtttttctgtctgcTCTCTCTGACATTAGCGGCTACCGAagTGGGTCTCGGTGgtaaaactctttttttcccGACCAATACTGACTCCAGTTATGTTCAAATCGATCCTGATAAACCCCTGAGTCTGTCAGCGTTTACTCTCTGCATGCGTGTCAGGCTGGAGCTGCTGGTCGATAGGGTGGTCATCCTGTTCGCCTACCGCACATCTGAAGTTGATGAACTTAACGTGTGGAGAGAGAAAGATGGCCGTGTGGGTTTGGTTATTCAGTCTGATAAGGATGCAGCAATGGTTCACCTGTCTCCACGCTCCACATTTCAGACTCACCTGTGCATCACCTGGGATTCTGCAACTGGTCTTACTGGTTTTTGGGAGGACGGACGTCGCAGTGTGTACCAAATGTACAGGAAAGGTTACTCCATTCGTCCTGGCGGCACCGTCCTGCTCGGACAAGACCCGGATTCATTTGTAGGTTCCTTTGATGCAGCTCAGAGCTTTGTGGGAGAAATAACAGATGTGCAAATGTGGGACTATGTTCTGCCCAGCACTCAGATTAAAGCGGTGTACTCAAACCAGGATGATCGTGTGAAGGGAAATGTGTTTGATTGGAACACCATCAAATATGATGTTACTGGAAATGTGCTTGTGGTTCCAGATAACTGACTGGATCAGCTGTAATGTTTACCCAAGATTaaccaaacaataaaacaattctGAAAACT
>TCONS_00046697
CAAgatgttggttttgtttttctgtctgcTCTCTCTGACATTAGCGGCTACCGAaggttttattttggttttgtctTGCAGTGGGTCTCGGTGgtaaaactctttttttcccGACCAATACTGACTCCAGTTATGTTCAAATCGATCCTGATAAACCCCTGAGTCTGTCAGCGTTTACTCTCTGCATGCGTGTCAGGCTGGAGCTGCTGGTCGATAGGGTGGTCATCCTGTTCGCCTACCGCACATCTGAAGTTGATGAACTTAACGTGTGGAGAGAGAAAGATGGCCGTGTGGGTTTGGTTATTCAGTCTGATAAGGATGCAGCAATGGTTCACCTGTCTCCACGCTCCACATTTCAGACTCACCTGTGCATCACCTGGGATTCTGCAACTGGTCTTACTGGTTTTTGGGAGGACGGACGTCGCAGTGTGTACCAAATGTACAGGAAAGGTTACTCCATTCGTCCTGGCGGCACCGTCCTGCTCGGACAAGACCCGGATTCATTTGTAGGTTCCTTTGATGCAGCTCAGAGCTTTGTGGGAGAAATAACAGATGTGCAAATGTGGGACTATGTTCTGCCCAGCACTCAGATTAAAGCGGTGTACTCAAACCAGGATGATCGTGTGAAGGGAAATGTGTTTGATTGGAACACCATCAAATATGATGTTACTGGAAATGTGCTTGTGGTTCCAGATAACTGACTGGATCAGCTGTAATGTTTACCCAAGATTaaccaaacaataaaacaattctGAAAA
>TCONS_00046698
ACTTGGAGCAAgatgttggttttgtttttctgtctgcTCTCTCTGACATTAGCGGCTACCGAagTGGGTCTCGGTGgtaaaactctttttttcccGACCAATACTGACTCCAGTTATGTTCAAATCGATCCTGATAAACCCCTGAGTCTGTCAGCGTTTACTCTCTGCATGCGTGTCAGGCTGGAGCTGCTGGTCGATAGGGTGGTCATCCTGTTCGCCTACCGCACATCTGAAGTTGATGAACTTAACGTGTGGAGAGAGAAAGATGGCCGTGTGGGTTTGGTTATTCAGTCTGATAAGGATGCAGCAATGGTTCACCTGTCTCCACGCTCCACATTTCAGACTCACCTGTGCATCACCTGGGATTCTGCAACTGGTCTTACTGGTTTTTGGGAGGACGGACGTCGCAGTGTGTACCAAATGTACAGGAAAGGTTACTCCATTCGTCCTGGCGGCACCGTCCTGCTCGGACAAGACCCGGATTCATTTGTAGGTTCCTTTGATGCAGCTCAGAGCTTTGTGGGAGAAATAACAGATGTGCAAATGTGGGACTATGTTCTGCCCAGCACTCAGATTAAAGCGGTGTACTCAAACCAGGATGATCGTGTGAAGGGAAATGTGTTTGATTGGAACACCATCAAATATGATGTTACTGGAAATGTGCTTGTGGTTCCAGATAACTGACTGGATCAGCTGTAATGTTTACCCAAGATTaaccaaacaataaaacaattctGAAAA

Function

symbol description
crp3 Predicted to enable metal ion binding activity. Human ortholog(s) of this gene implicated in several diseases, including Kawasaki disease; autoimmune disease (multiple); macular degeneration (multiple); middle cerebral artery infarction; and nephritis (multiple). Orthologous to several human genes including CRP (C-reactive protein).

GO:

id name namespace
GO:0046872 metal ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060503-220 Predicted to enable metal ion binding activity. Human ortholog(s) of this gene implicated in several diseases, including Kawasaki disease; autoimmune disease (multiple); macular degeneration (multiple); middle cerebral artery infarction; and nephritis (multiple). Orthologous to several human genes including CRP (C-reactive protein).

Ensembl:

ensembl_id ENSDARG00000042613

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00046696 False 760 mRNA 0.47 3 38092608 38097305
TCONS_00046697 False 758 mRNA 0.46 2 38092610 38094074
TCONS_00046698 True 741 mRNA 0.47 2 38092610 38094082

Neighbor

gene id symbol gene type direction distance location
XLOC_023658 BX001030.2 coding downstream 20 38085317 ~ 38092588 (-)
XLOC_023657 crp2 coding downstream 6819 38082471 ~ 38085789 (-)
XLOC_023656 crp1 coding downstream 13347 38073223 ~ 38079261 (-)
XLOC_023655 si:ch211-248l17.3 coding downstream 80015 37999090 ~ 38012593 (-)
XLOC_023654 metrn coding downstream 136615 37941618 ~ 37955993 (-)
XLOC_023660 BX001030.1 coding upstream 1591 38098896 ~ 38099675 (-)
XLOC_023661 crp2 coding upstream 12494 38109799 ~ 38113208 (-)
XLOC_023662 si:ch211-234p6.9 coding upstream 24098 38121403 ~ 38122121 (-)
XLOC_023663 crp6 coding upstream 33299 38130604 ~ 38131381 (-)
XLOC_023664 crp7 coding upstream 40168 38137473 ~ 38192003 (-)
XLOC_023665 dre-mir-735 misc upstream 80656 38177961 ~ 38178027 (-)
XLOC_023652 NA non-coding downstream 365659 37724974 ~ 37726949 (-)
XLOC_023651 NA non-coding downstream 384557 37705626 ~ 37708051 (-)
XLOC_023644 CU469584.1 non-coding downstream 688142 37361189 ~ 37404466 (-)
XLOC_023641 NA non-coding downstream 797507 37289468 ~ 37295101 (-)
XLOC_023667 NA non-coding upstream 100533 38197838 ~ 38215482 (-)
XLOC_023669 NA non-coding upstream 113798 38211103 ~ 38212927 (-)
XLOC_023670 NA non-coding upstream 143869 38241174 ~ 38252296 (-)
XLOC_023673 CU681836.1 non-coding upstream 299267 38396572 ~ 38397488 (-)

Expression


Co-expression Network