RNA id: TCONS_00046698


Basic Information

Item Value
RNA id TCONS_00046698
length 741
RNA type mRNA
GC content 0.47
exon number 2
gene id XLOC_023659
representative True

Chromosome Information

Item Value
chromosome id NC_007135.7
NCBI id CM002908.2
chromosome length 42172926
location 38092608 ~ 38097305 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ACTTGGAGCAAgatgttggttttgtttttctgtctgcTCTCTCTGACATTAGCGGCTACCGAagTGGGTCTCGGTGgtaaaactctttttttcccGACCAATACTGACTCCAGTTATGTTCAAATCGATCCTGATAAACCCCTGAGTCTGTCAGCGTTTACTCTCTGCATGCGTGTCAGGCTGGAGCTGCTGGTCGATAGGGTGGTCATCCTGTTCGCCTACCGCACATCTGAAGTTGATGAACTTAACGTGTGGAGAGAGAAAGATGGCCGTGTGGGTTTGGTTATTCAGTCTGATAAGGATGCAGCAATGGTTCACCTGTCTCCACGCTCCACATTTCAGACTCACCTGTGCATCACCTGGGATTCTGCAACTGGTCTTACTGGTTTTTGGGAGGACGGACGTCGCAGTGTGTACCAAATGTACAGGAAAGGTTACTCCATTCGTCCTGGCGGCACCGTCCTGCTCGGACAAGACCCGGATTCATTTGTAGGTTCCTTTGATGCAGCTCAGAGCTTTGTGGGAGAAATAACAGATGTGCAAATGTGGGACTATGTTCTGCCCAGCACTCAGATTAAAGCGGTGTACTCAAACCAGGATGATCGTGTGAAGGGAAATGTGTTTGATTGGAACACCATCAAATATGATGTTACTGGAAATGTGCTTGTGGTTCCAGATAACTGACTGGATCAGCTGTAATGTTTACCCAAGATTaaccaaacaataaaacaattctGAAAA

Function

GO:

id name namespace
GO:0046872 metal ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060503-220 Predicted to enable metal ion binding activity. Human ortholog(s) of this gene implicated in several diseases, including Kawasaki disease; autoimmune disease (multiple); macular degeneration (multiple); middle cerebral artery infarction; and nephritis (multiple). Orthologous to several human genes including CRP (C-reactive protein).

Ensembl:

ensembl_id ENSDART00000137734

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00046695 lncRNA downstream 22 38085317 ~ 38092588 (-) True XLOC_023658
TCONS_00047257 lncRNA downstream 365661 37724974 ~ 37726949 (-) True XLOC_023652
TCONS_00047256 lncRNA downstream 384559 37705626 ~ 37708051 (-) True XLOC_023651
TCONS_00046681 lncRNA downstream 619639 37467001 ~ 37472971 (-) True XLOC_023645
TCONS_00047255 lncRNA downstream 797509 37289468 ~ 37295101 (-) True XLOC_023641
TCONS_00047258 lncRNA upstream 27332 38121414 ~ 38122121 (-) True XLOC_023662
TCONS_00047259 lncRNA upstream 103756 38197838 ~ 38215482 (-) True XLOC_023667
TCONS_00046880 lncRNA upstream 117021 38211103 ~ 38212927 (-) False XLOC_023669
TCONS_00047260 lncRNA upstream 147092 38241174 ~ 38251085 (-) False XLOC_023670
TCONS_00047261 lncRNA upstream 147092 38241174 ~ 38252296 (-) True XLOC_023670
TCONS_00046694 mRNA downstream 6821 38083094 ~ 38085789 (-) True XLOC_023657
TCONS_00046693 mRNA downstream 9232 38082471 ~ 38083378 (-) False XLOC_023657
TCONS_00046692 mRNA downstream 13349 38073223 ~ 38079261 (-) True XLOC_023656
TCONS_00046691 mRNA downstream 80017 37999090 ~ 38012593 (-) True XLOC_023655
TCONS_00046690 mRNA downstream 136617 37941618 ~ 37955993 (-) True XLOC_023654
TCONS_00046700 mRNA upstream 15717 38109799 ~ 38110779 (-) False XLOC_023661
TCONS_00046701 mRNA upstream 15732 38109814 ~ 38113208 (-) True XLOC_023661
TCONS_00046702 mRNA upstream 27321 38121403 ~ 38121920 (-) False XLOC_023662
TCONS_00046703 mRNA upstream 36522 38130604 ~ 38131381 (-) True XLOC_023663
TCONS_00046704 mRNA upstream 43391 38137473 ~ 38138307 (-) False XLOC_023664
TCONS_00046678 other downstream 688144 37366431 ~ 37404466 (-) True XLOC_023644
TCONS_00046677 other downstream 725262 37361189 ~ 37367348 (-) False XLOC_023644
TCONS_00046660 other downstream 1791614 36295311 ~ 36300996 (-) True XLOC_023621
TCONS_00046633 other downstream 3977096 34112756 ~ 34115514 (-) True XLOC_023597
TCONS_00046605 other downstream 5896198 32173138 ~ 32196412 (-) True XLOC_023573
TCONS_00046699 other upstream 4814 38098896 ~ 38099675 (-) True XLOC_023660
TCONS_00046706 other upstream 83879 38177961 ~ 38178027 (-) True XLOC_023665
TCONS_00046711 other upstream 117021 38211103 ~ 38212927 (-) False XLOC_023669
TCONS_00046712 other upstream 117201 38211283 ~ 38212872 (-) True XLOC_023669
TCONS_00046716 other upstream 277149 38371231 ~ 38384275 (-) True XLOC_023672

Expression Profile

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