RNA id: TCONS_00046712


Basic Information

Item Value
RNA id TCONS_00046712
length 363
RNA type processed_transcript
GC content 0.61
exon number 3
gene id XLOC_023669
representative True

Chromosome Information

Item Value
chromosome id NC_007135.7
NCBI id CM002908.2
chromosome length 42172926
location 38211103 ~ 38212927 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TACACTTTCGGCAGCGACACCAAACTGGATGTTGGCACCGTCTCTCCTCCTCAAGTGAGCGTCCTGTCGCCCTCCAGTGCAGAGATCTCCTCCAAGCGGGCGGCTACACTGCTGTGTGTGGCCAACAAGGGCTTCCCGTCAGACTGGAGGCTGGTCTGGAAGGTCCTCAACAGCAGCGGGGGTCAGGAGAGCAGCAGTGCTGGGCTCCTGGAGAAGGACGGTCTGTACAGCTGGAGCAGCAGCCTGACTCTCACTGAGCAGCAGTGGATGGAGAGCGTCTCAGTGAGCTGTGAGGCCACACGGAGCGGCCAGCCTGCGCTCACTGCAGGAGACACTGTGACGAGACAGCAGTGTTCAGAGTAG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDART00000105669

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00047258 lncRNA downstream 89162 38121414 ~ 38122121 (-) True XLOC_023662
TCONS_00046695 lncRNA downstream 118695 38085317 ~ 38092588 (-) True XLOC_023658
TCONS_00047257 lncRNA downstream 484334 37724974 ~ 37726949 (-) True XLOC_023652
TCONS_00047256 lncRNA downstream 503232 37705626 ~ 37708051 (-) True XLOC_023651
TCONS_00046681 lncRNA downstream 738312 37467001 ~ 37472971 (-) True XLOC_023645
TCONS_00047260 lncRNA upstream 28302 38241174 ~ 38251085 (-) False XLOC_023670
TCONS_00047261 lncRNA upstream 28302 38241174 ~ 38252296 (-) True XLOC_023670
TCONS_00046719 lncRNA upstream 311121 38523993 ~ 38524619 (-) True XLOC_023675
TCONS_00046720 lncRNA upstream 323547 38536419 ~ 38538430 (-) False XLOC_023676
TCONS_00047262 lncRNA upstream 323547 38536419 ~ 38547060 (-) False XLOC_023676
TCONS_00046710 mRNA downstream 6147 38202421 ~ 38205136 (-) True XLOC_023668
TCONS_00046709 mRNA downstream 6150 38202298 ~ 38205133 (-) False XLOC_023668
TCONS_00046707 mRNA downstream 14243 38194136 ~ 38197040 (-) False XLOC_023666
TCONS_00046708 mRNA downstream 14243 38194323 ~ 38197040 (-) True XLOC_023666
TCONS_00046705 mRNA downstream 19280 38137507 ~ 38192003 (-) True XLOC_023664
TCONS_00046713 mRNA upstream 56216 38269088 ~ 38288883 (-) True XLOC_023671
TCONS_00046714 mRNA upstream 156479 38369351 ~ 38374744 (-) False XLOC_023672
TCONS_00046715 mRNA upstream 156482 38369354 ~ 38384432 (-) False XLOC_023672
TCONS_00046721 mRNA upstream 345117 38557989 ~ 38574631 (-) False XLOC_023677
TCONS_00046722 mRNA upstream 345244 38558116 ~ 38579066 (-) True XLOC_023677
TCONS_00046706 other downstream 33256 38177961 ~ 38178027 (-) True XLOC_023665
TCONS_00046699 other downstream 111608 38098896 ~ 38099675 (-) True XLOC_023660
TCONS_00046678 other downstream 806817 37366431 ~ 37404466 (-) True XLOC_023644
TCONS_00046677 other downstream 843935 37361189 ~ 37367348 (-) False XLOC_023644
TCONS_00046660 other downstream 1910287 36295311 ~ 36300996 (-) True XLOC_023621
TCONS_00046716 other upstream 158359 38371231 ~ 38384275 (-) True XLOC_023672
TCONS_00046717 other upstream 183700 38396572 ~ 38397488 (-) True XLOC_023673
TCONS_00046718 other upstream 234008 38446880 ~ 38447958 (-) True XLOC_023674
TCONS_00046739 other upstream 1414748 39627620 ~ 39633263 (-) True XLOC_023693
TCONS_00046744 other upstream 1513974 39726846 ~ 39726978 (-) True XLOC_023698