RNA id: TCONS_00046721


Basic Information

Item Value
RNA id TCONS_00046721
length 1603
RNA type mRNA
GC content 0.52
exon number 11
gene id XLOC_023677
representative False

Chromosome Information

Item Value
chromosome id NC_007135.7
NCBI id CM002908.2
chromosome length 42172926
location 38557989 ~ 38579066 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATAAAGTgcatgttttgtgtttgtgtgtttcagaaAGCACAGTTCTCCTGGGATCCAGAGACTGTAGGAATGATTCATGGCTCGTTTTTTTGGGGATATATCGTCACTCAGATTCCAGGAGGGTTTATCTGTCAGAAATTTGCTGCCAACAGGGTTTTTGGCTTTGCGGTGGTGTCCACGTCTATCCTGAATATGATGATTCCCACTGCGGCACGAATGCACTTCGGCTGTGTGATCCTAGTGAGGATATTACAGGGGCTCGTTGAGGGTGTTTCTTACCCAGCATGTCATGGGATCTGGGCGAAATGGGCTCCGCCTCTAGAGAGAAGCCGATTGGCCACAACAGCATTCTGTGGTTCGTATGCGGGCGCAGTGATAGCGATGCCGTTGGCTGGTGTTCTGGTCCAATACTCCGGCTGGTCCTCGGTCTTCTATGTGTACGGTAGTTTTGGTGTGTGTTGGTATCTGTTCTGGATTCTGGTGTCGTATGAGAGTCCAGCAGCTCATCCCACCATCACACCAGAGGAACGCAAATACATCGAGGACGCCATCGGGGAATCAGCTGGACTGGTCAACCCACTCAcgAAATTTAACACCCCCTGGCGTCAGTTCTTCACATCGATGCCCGTCTACGCCATCATCGTGGCCAACTTCTGCAGGAGCTGGACCTTCTACCTGCTGCTCATCAGCCAGCCGGCGTACTTTGAGGAGGTCTTCAAGTTCGAGATCAGCAAGGTTGGCATTCTCTCTGCTCTCCCTCATCTGGTGATGACCATTGTTGTGCCCATCGGCGGTCAGTTGGCAGATTATCTGCGAACTCATAACCTCATGACCACCACCAACGTCAGGAAACTCATGAACTGCGGAGGTTTTGGTTTGGAGGCCACGTTTCTGCTGGTTGTGGGTTTTTCTCACACGAAAGGAGTCGCCATTTCATTTCTGGTTCTTGCTGTTGGGTTTAGTGGTTTCGCCATCTCAGGCTTCAATGTGAATCATCTGGACATTGCACCGCGCTACGCCAGTATACTGATGGGCATCTCTAACGGCGTCGGGACGCTCTCCGGCATGGTGTGTCCTTTGATTGTTGGTGCCATGACCAAAAACAAGACGCGCGAGGAATGGCAGTATGTGTTTCTCATTGCTTCACTTGTTCATTATGGTGGAGTTATCTTCTACGGTCTCTTTGCGTCAGGAGAGAAGCAGCCGTGGGCCGAGCCGGAGAACACGAGCGAGGAGAAATGCGGGATTTTAGGAGAAGACGAGCTGGCGGATGAAACTGAGGAGCTGTACCGCTCAGCGGGCGGTGGCTATGGTGCAACCATGCAATCAGGAGACCCCAACGGGGCGGGGACTGGAGGGGGCGGAGCCGGAGGTAGCTGGGTCTCAGACTGGGACAAAACGGAGGAATACGTTCAACCAGTGGGAACAAACAGCTTCCTGTACGGAGGAGAAGAGGGCAGAGGGATGAACGAATGACTTCCACAGCTCACAGAGTACAAGCAGAACGGGACGGGTGGGTGAAACACATCCCAAACACTAACTGACTGGAACGAGGACTTGCTTTTTAacccaaactaaaagaaaatacTATAAGTAACATCAA

Function

GO:

id name namespace
GO:0035249 synaptic transmission, glutamatergic biological_process
GO:0055085 transmembrane transport biological_process
GO:0098700 neurotransmitter loading into synaptic vesicle biological_process
GO:0050803 regulation of synapse structure or activity biological_process
GO:0006820 anion transport biological_process
GO:0030672 synaptic vesicle membrane cellular_component
GO:0060076 excitatory synapse cellular_component
GO:0030285 integral component of synaptic vesicle membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0022857 transmembrane transporter activity molecular_function
GO:0005313 L-glutamate transmembrane transporter activity molecular_function
GO:0005326 neurotransmitter transmembrane transporter activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-131125-32 Predicted to enable L-glutamate transmembrane transporter activity and neurotransmitter transmembrane transporter activity. Predicted to be involved in several processes, including glutamatergic synaptic transmission; neurotransmitter loading into synaptic vesicle; and regulation of synapse structure or activity. Predicted to act upstream of or within transmembrane transport. Predicted to be located in membrane. Predicted to be active in excitatory synapse. Predicted to be integral component of synaptic vesicle membrane. Orthologous to human SLC17A7 (solute carrier family 17 member 7).

Ensembl:

ensembl_id ENSDART00000154539

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00047263 lncRNA downstream 9952 38536419 ~ 38548037 (-) True XLOC_023676
TCONS_00047262 lncRNA downstream 10929 38536419 ~ 38547060 (-) False XLOC_023676
TCONS_00046720 lncRNA downstream 19559 38536419 ~ 38538430 (-) False XLOC_023676
TCONS_00046719 lncRNA downstream 33370 38523993 ~ 38524619 (-) True XLOC_023675
TCONS_00047261 lncRNA downstream 305693 38241174 ~ 38252296 (-) True XLOC_023670
TCONS_00046881 lncRNA upstream 27386 38602017 ~ 38609746 (-) True XLOC_023678
TCONS_00046725 lncRNA upstream 81466 38656097 ~ 38657610 (-) True XLOC_023680
TCONS_00046726 lncRNA upstream 90447 38665078 ~ 38671333 (-) True XLOC_023681
TCONS_00047264 lncRNA upstream 343015 38917646 ~ 38933203 (-) True XLOC_023684
TCONS_00047265 lncRNA upstream 457545 39032176 ~ 39091863 (-) False XLOC_023685
TCONS_00046715 mRNA downstream 173557 38369354 ~ 38384432 (-) False XLOC_023672
TCONS_00046714 mRNA downstream 183245 38369351 ~ 38374744 (-) False XLOC_023672
TCONS_00046713 mRNA downstream 269106 38269088 ~ 38288883 (-) True XLOC_023671
TCONS_00046710 mRNA downstream 352853 38202421 ~ 38205136 (-) True XLOC_023668
TCONS_00046709 mRNA downstream 352856 38202298 ~ 38205133 (-) False XLOC_023668
TCONS_00046723 mRNA upstream 43871 38618502 ~ 38644937 (-) True XLOC_023679
TCONS_00046724 mRNA upstream 74254 38648885 ~ 38657683 (-) False XLOC_023680
TCONS_00046727 mRNA upstream 152106 38726737 ~ 38787607 (-) False XLOC_023682
TCONS_00046728 mRNA upstream 152874 38727505 ~ 38787457 (-) True XLOC_023682
TCONS_00046729 mRNA upstream 240103 38814734 ~ 38816725 (-) True XLOC_023683
TCONS_00046718 other downstream 110031 38446880 ~ 38447958 (-) True XLOC_023674
TCONS_00046717 other downstream 160501 38396572 ~ 38397488 (-) True XLOC_023673
TCONS_00046716 other downstream 173714 38371231 ~ 38384275 (-) True XLOC_023672
TCONS_00046711 other downstream 345062 38211103 ~ 38212927 (-) False XLOC_023669
TCONS_00046712 other downstream 345117 38211283 ~ 38212872 (-) True XLOC_023669
TCONS_00046739 other upstream 1052989 39627620 ~ 39633263 (-) True XLOC_023693
TCONS_00046744 other upstream 1152215 39726846 ~ 39726978 (-) True XLOC_023698
TCONS_00046749 other upstream 1236440 39811071 ~ 39885785 (-) True XLOC_023700
TCONS_00046765 other upstream 2680243 41254874 ~ 41254989 (-) True XLOC_023717
TCONS_00046772 other upstream 3252075 41826706 ~ 41826822 (-) True XLOC_023728

Expression Profile

//