RNA id: TCONS_00047257


Basic Information

Item Value
RNA id TCONS_00047257
length 1526
lncRNA type antisense_over
GC content 0.39
exon number 2
gene id XLOC_023652
representative True

Chromosome Information

Item Value
chromosome id NC_007135.7
NCBI id CM002908.2
chromosome length 42172926
location 37724974 ~ 37726949 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CAGCCCAGCGAGTCCACCCGTCACGGTCAGCTGATTATCTGTACAGGTAAAGGGAGTGGACTCTAAAGAATCAGGATTACTTGCACAATGAGGTATGACTTGATTCCGAGTTGGTGACCTGCAATCTGATCTCTCCCCTCCCTGTAAAGTCACACTGTGAGGTTTGGCTTCAACATCCTGCAGCGTTTCATGACTTGGTATATTTTCTTCAGATTTATTATCGAATGCAATTGCACTTGATTTCACAGTCAAAGAGTCAGTGAGGGGGTTCACAAGAGCGAGATCTTCCACAAGTGGGTTCGCATTGTTTTGAGCATTGCTTTGTTCCTGACAGGCATCAGTTTTTGGCTTTTGATTGTTGTCATGGACTAAATCAGTCTGCAAATAGTCTGACTGACTTTTTAAACGGGTTTCTAGTTGATTTTGGTGTAAATCTGAGATATCCAAATCCATTTGTGTGTCTAGAATCTCTGTGTGATCTATTGTTTTTGAGTGCTGTTTATCCGTTGCCTCAGGGTTATCGTCAACGTTGTCGGTCTGAATACATGTTGGATTATGCTGAAACTCAAGTGTAAGTGCATCGGATTCAAAATCATGTGAATTTGCATCACAGTTGACTAGttttgtaatttcaaatgaaTCTGTTCGAGGTTTGGCTTCGACATTCTGCAGTGTATCATGACTTAGTAAATTTCCTTCAGATTTATTTTCGAATGCAATTGCACTTGATATTGCAGTCAAAGAGTCGTTCAGTTGGTCCACAAGAGCGAGATCTTCCACAAGTGGGTTTTCTTTGTTTTGAGCACCGATTTGTTCCTGACAGGCATTAGTTCTTGGTTCCAGATTCTTGTCATGGAGTAAATCATTCTGCAAATATTCCGACTGACTTCCTAAATCAGTTGCTTGGTGATTTTGATGTGAATCTGATATCTCTAAATCTGTTAGTGTGTCTGGAATCTCTTTTTCCATTGCCTTAGGGTTATCGTCAACGTTGCCTGTCTGAATAAATGTTAGATTATTCTGAAATTCAAGTGCAAGTGCATCAGATTCAAAATCATGTGAATTTGCATCACAGTCCACCAGTTTTGACAGTTCAAATGAATCTGTTGGATGTTTGGCTTCGACATTCTGCACCATATCGTGACTGGttagatttttttcagatttattttcgAATGCAATTGCACTTGATTTCGTGGTCAAAGAGTCATTCCGTTGGTCCACAAGAGCGAGATCTTCAACAAGTGTGTTTTCATTGTTTTGAGCACTGATTTGTTCCTGACAGGCGTCAGTTTTTGCATTTGGTTCCTGATTGTTGTCATGGAGTAAATCATTCAGCAAATAGTCAGACTTGCTTTTTAAATCTTGTTGATTTTGATGTAAATCCGAGATTTCTAAATCCATGAGTGTGTCTGGAATCTCTGTATTATCTGTTTTTATTGAGTAGAGTTTCACCATTTCCTCAGGGTTATTGTCAACGCTGCCTGTCTGAACGCATGTCACATTATTCTGAATTTCAAGTGTAA

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00047256 lncRNA downstream 16923 37705626 ~ 37708051 (-) True XLOC_023651
TCONS_00046681 lncRNA downstream 252003 37467001 ~ 37472971 (-) True XLOC_023645
TCONS_00047255 lncRNA downstream 429873 37289468 ~ 37295101 (-) True XLOC_023641
TCONS_00047254 lncRNA downstream 554050 37170317 ~ 37170924 (-) True XLOC_023637
TCONS_00047253 lncRNA downstream 648157 37069683 ~ 37076817 (-) True XLOC_023636
TCONS_00046695 lncRNA upstream 358368 38085317 ~ 38092588 (-) True XLOC_023658
TCONS_00047258 lncRNA upstream 394465 38121414 ~ 38122121 (-) True XLOC_023662
TCONS_00047259 lncRNA upstream 470889 38197838 ~ 38215482 (-) True XLOC_023667
TCONS_00046880 lncRNA upstream 484154 38211103 ~ 38212927 (-) False XLOC_023669
TCONS_00047260 lncRNA upstream 514225 38241174 ~ 38251085 (-) False XLOC_023670
TCONS_00046686 mRNA downstream 26178 37695768 ~ 37698796 (-) True XLOC_023650
TCONS_00046685 mRNA downstream 36576 37681082 ~ 37688398 (-) True XLOC_023649
TCONS_00046684 mRNA downstream 44057 37661140 ~ 37680917 (-) True XLOC_023648
TCONS_00046683 mRNA downstream 84269 37631632 ~ 37640705 (-) True XLOC_023647
TCONS_00046682 mRNA downstream 156615 37567029 ~ 37568359 (-) True XLOC_023646
TCONS_00046687 mRNA upstream 127053 37854002 ~ 37877743 (-) False XLOC_023653
TCONS_00046688 mRNA upstream 144271 37871220 ~ 37877554 (-) False XLOC_023653
TCONS_00046689 mRNA upstream 146009 37872958 ~ 37877978 (-) True XLOC_023653
TCONS_00046690 mRNA upstream 214669 37941618 ~ 37955993 (-) True XLOC_023654
TCONS_00046691 mRNA upstream 272141 37999090 ~ 38012593 (-) True XLOC_023655
TCONS_00046678 other downstream 320508 37366431 ~ 37404466 (-) True XLOC_023644
TCONS_00046677 other downstream 357626 37361189 ~ 37367348 (-) False XLOC_023644
TCONS_00046660 other downstream 1423978 36295311 ~ 36300996 (-) True XLOC_023621
TCONS_00046633 other downstream 3609460 34112756 ~ 34115514 (-) True XLOC_023597
TCONS_00046605 other downstream 5528562 32173138 ~ 32196412 (-) True XLOC_023573
TCONS_00046699 other upstream 371947 38098896 ~ 38099675 (-) True XLOC_023660
TCONS_00046706 other upstream 451012 38177961 ~ 38178027 (-) True XLOC_023665
TCONS_00046711 other upstream 484154 38211103 ~ 38212927 (-) False XLOC_023669
TCONS_00046712 other upstream 484334 38211283 ~ 38212872 (-) True XLOC_023669
TCONS_00046716 other upstream 644282 38371231 ~ 38384275 (-) True XLOC_023672