LOC110525762 (LOC106585005)


Basic Information

Item Value
gene id LOC110525762
gene name LOC106585005
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 31828730 ~ 31857288 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021606178.2
cccaaaacACATAGTACTTGATAGTATTTTTTACTTGGGTACTTTACACCACGGCTATTAATGTTTGATGACCCAGCACAATGACAGCCATGAAAACAGTTAAAACCTAAAAGTCAACAACAGAGAAATCAGCGGCAGCGCCAGTGAAGAGTctggctacccaaactccttgTTTCAGCCAGACAAATTCAAGAGTTCATGTCAACGCAGTTcctcatactgtagctactgcAAAAATCGACAAGAGACTAGATCATTTCCGGGAATGGTTCATTCTAATCGCGAGCCCTACCAGGAAAGAAGCCTCAGCTGACAGCGGTGTTCGGGTGCCGCATATATTTCAGATTGTAGACAGATGTCAACTAAGAGAAACAACAGATTTAAACGAGACGTGTTTTACTCTTTGCGACACTTGGGACGCACGCACACCGAACAGTAAAACGGtgATATGTGGTAGCAGGCAGCACTATGCCATACGTGGACAGGCAGAACCGTGTGTGTGGCTTCCTGGATATTGAGGAGAAGGAGGGCAGCAGTCGCTTCCAGAGACGCTacttcatactggacacacagGGCAACACACTGCAGTGGTACATGGACAacccccagAACCTGCCTAGTGGAGCGAACGCAGTTGGGATTCTGCAGCTGACATACATCTCCAAGGTGAGCGAGGCCACGGGGAAACAGAAGTCCAAGACTGAGTTCTGCTTTGTGATCAATGCAGTGTCTCGGCGTTATTTCCTCCATGCCAACGATGCTGCTGACCTGAAAGACTGGGTCCTCGCTCTGAACAAAGCTACCAAGATCACTGTCCCTAAAGCAGGGCCTCTCCAGCCCAGATCAGAGGTTTCTACAGTAACCGGTGAGGCAGTGGGTAAGAGGCTGGCCTACAAGACTGAGATCATCGGGGGAGTGGTGGTGCACACACCCATCTACCAGAATGAGGGTGGGGAAATGGAGGTAGGGGACAGGAGGGTCTCCTCTGTAGGCAGTAGACCAGGTGTACTGAGGTGTGGCTATTGTGTCAAACAGGGTAACgtgAGGAAAAGCTGGAAGAGACGTTTCTTCACACTGGACCACAACGCTGTCAGTTACTACAAGTGTGAGATGGATAAGGAGCCCCTGAGAACTGTTTCTCTGAGAGACATTCAGAAGGTCCATGAGTGTCTGGTGAAATCTGGGGACCTGCTGATGAGAGATAATCTGTTTGAAATCATCACCAGCTCCAGGGTCTTCTACGTCCagACAGACACTCCAGAGGACATGCAGGGCTGGATCAGAGACATTGAGTTGAAGATACAGGACTTCAGAGGCCCTGCCAAGggttctGCATTTACGTATCGCCATGGTAACTCCTCCCACCCACCCTCTGTGTTCCGTGGTCGCCAGGGAGATGACAGGAGACCCCCACTAGTGAAGTCGTGTTCCGTAGCCCCGGGGTGGCAGCCCTGGACCCCCGTACCCCAAAGAGAGGCTCCCGCTCTGGGCACACTGGACAAGGACAGTCACTTTAGCAATCTGCCCTCCAGTCTTTCCTCTcgctccacctcttcctccacctcctcatcttcatcctccccctccactcccactCTCATCCCACAGGGGGTCCCAGCTCCAGCCCTAGCCAGTGGTGTGGGGGTCCCAGCCTGCCCTGGCCCCATAGCTCCAGACCCCTCCAGCAGCCGGAGGAGACACCGCTCTCAGCCTCAGCCCCCCAAAGACCGCAGCTTCCCTTTCAGCCTGGACGATGATGGCATCCGCACCACAGACGTCTAGAACCAACCACTTCTAGAATCAACAAAACTCTGGATCCAACAATATATAGAACCACCATCTAGAACCAATGTGTAGACAGACAAACAATGACACTTGTTTGAGTGCTTTCTACCGTTGAAAGACTGAacctccctcccccacccccttCTCCTCTGCTCTGAGGAGGTAGCTCTGGTGGGGGAGGGTAGTGATGTAAACTGGGGTTCCTGGATGCGTTCTCTCACTGAGGGGTGTGTCAGTAGTGGCTGTGGGCTTTTGGTATAGAGGGtgactcagagagagagcagtcttgGGCAGACTGGGAGGGGTTATCAGTATTAGAGTGTCTGGTGGAATGTGAAGGATATGTTATTTTATTGTACGATTTCCTCTTTAAACTTGAATGTAGTCCACCCAGGTACTGAGATGAAGGAAGGTGAATGCTGTGGTGGAGCCTGGTCTGTCTACCGAACACCCTCCACTAGTCTAAGTCAGCTGGTCTTTTGCTTGTATTAACCAAGGCtacgtcccaattggcacccactatgggtcctggtcaaaagtagtacactatataatgaatatggTGCCACTGCCAATTGGGACCAAACCCAAGGGTCCCGTTCAATCAATACCCTGGTCATGGAACATGTTGGTGTCTGTGGCTCTGCCTGTAGACAGTCCTGTTCTCTTGTTAGACTGCATGCAATTGCGTCAAATCGCTACATCAGCAGCACATTTTGTACATACGCTTTTAGCGTATTTCTGCACGTTGTTCCACAAGCCTGGATTCTCTTGCTCAAATGCAAATGATCTACTATGGTATTGTGTCATGTCACATGTTGTGTTTTGCCTGCCTGCACCTCACCGACCCAGGTCCATGTGTGCTTTTCTCTTCTCTTTAAACTTAACCTGTCATGTTTCTGATTCTTTACATAGACACCTGTTAGAAATCACAAACATCaatatctgctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagacacatcggttcaaatactattttaatgTATTTTAATTAATTTTCAATGCATTTGAAACATGTATTCAGATAACCTTTATTTGAAAAAaacaagtagttgaatattggaatgtatttggaCTTATACTtggaaagtatttgaaaatactcaaatacactcccATACATTTAACCCAGTtatttgaaaatagtatttgaataTACTTTTAAAATACAATTTGGTCAactatttgttttttgtttttacaaataACTCAAATAAAAGTACCTGTTTTGGGCTGTGTATTTGAAAACACTGAAATACacaggaaaaaagtatttaaataacaaatgctcaaatacacatgtatttgaacccagagtgtgtgtgtgtgtatctgtgtgttgagTTTATCATGGTTGACTGGCTGGTCAAACATATTAGAGAGGATAATGTTTGTTTTTAAGTTAAGGCATCTTTGATTTCTGTATATGCTCTTTTATCATTTTGCAGTACTGTAATTCCGGAAAGAGAAAGGTTAAATGCTAATGTCTGCTATTTCTAATGCAATTTTTTTTCTCTGATTTAATTCCTGTGGTACAGTATTTCAGATGTAATGGACTGCCTTCTACCTCGTACCTGGTGTCCACTCACCTACCTGATCATAatggtgttgttttttttttttacttataaGCAAGTGCATTAAATAATAAGACAAAAGCTTTTTA

Function

NR:

description
pleckstrin homology domain-containing family A member 2-like isoform X1

GO: NA

KEGG:

id description
K23796 PLEKHA1_2; pleckstrin homology domain-containing family A member 1/2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021606178.2 True 3495 mRNA 0.46 12 31828730 31857288

Neighbor

gene id symbol gene type direction distance location
LOC110525759 LOC106585003 coding downstream 4384 31800969 ~ 31824346 (-)
LOC118964859 NA coding downstream 22078 31804840 ~ 31806652 (-)
LOC110525757 LOC106585001 coding downstream 70226 31735854 ~ 31758504 (-)
gatc gatc coding downstream 172431 31652136 ~ 31656299 (-)
LOC118936268 ublp coding downstream 187179 31640221 ~ 31641551 (-)
si:ch211-113d22.2 LOC106585007 coding upstream 2878 31860166 ~ 31864841 (-)
LOC110525764 LOC106585006 coding upstream 9640 31866928 ~ 31903950 (-)
srrd srrd coding upstream 87261 31944549 ~ 31947393 (-)
LOC110525767 LOC106584919 coding upstream 116544 31973832 ~ 31984689 (-)
LOC110517556 dnajb5 coding upstream 164453 32021741 ~ 32033670 (-)
G496801 NA non-coding downstream 69275 31759147 ~ 31759455 (-)
G496789 NA non-coding downstream 123685 31704664 ~ 31705045 (-)
G496776 NA non-coding downstream 159094 31669254 ~ 31669636 (-)
G496775 NA non-coding downstream 160373 31668033 ~ 31668357 (-)
G496771 NA non-coding downstream 168783 31659480 ~ 31659947 (-)
G496919 NA non-coding upstream 137170 31994458 ~ 31994683 (-)
G496920 NA non-coding upstream 137988 31995276 ~ 31995499 (-)
G496932 NA non-coding upstream 166640 32023928 ~ 32024730 (-)
G496950 NA non-coding upstream 225599 32082887 ~ 32083103 (-)
G496956 NA non-coding upstream 236160 32093448 ~ 32093762 (-)
G496777 NA other downstream 156803 31670978 ~ 31671927 (-)
G496772 NA other downstream 167112 31661393 ~ 31661618 (-)
G495560 NA other downstream 1253157 30575118 ~ 30575573 (-)
G495554 NA other downstream 1279280 30545402 ~ 30549450 (-)
LOC110525714 LOC106585251 other downstream 1301184 30526034 ~ 30527686 (-)
LOC110525784 LOC106585031 other upstream 822754 32680037 ~ 32682899 (-)
G498484 rpl6 other upstream 1470219 33327507 ~ 33330504 (-)
LOC110525812 LOC103397138 other upstream 1475362 33332650 ~ 33336818 (-)
G498960 NA other upstream 2183071 34040359 ~ 34041174 (-)
G501142 NA other upstream 3908078 35765366 ~ 35767929 (-)

Expression


Co-expression Network