XLOC_024362 (prickle1a)


Basic Information

Item Value
gene id XLOC_024362
gene name prickle1a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007136.7
NCBI id CM002909.2
chromosome length 37502051
location 314608 ~ 348784 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00048182
GTTTGAGGCATCAGTTCTGCTCCTTCACTCCACTGTAAACATCCTGAGCAGCACAACATGATGTGGATTTACATCTGATTTACAGGCTCCCTCTGAGGACATGTAGGATCGCGGAGAACACTCTTTCAGCCCTGAATACTGCTCGCAGACGCTTCTGACTGAGGGGGTGTTAGTGATGGAGCTGGAGAATCGCGGTGGGCTCCACATGGGGTCAAAGGTCAACAAACTCACCTTGGGTTTCCAGCGCAGCTCCACGTCAGATGATGACTCCGGCTGCGCTCTGGAGGAGTACGCCTGGGTGCCGCCCGGACTCAGACCAGAGCAGGTCGCGCTGTATTTCTCATGTCTCCCGGAGGATAAAGTCCCGTATGTGAACAGCCCCGGAGAGAAACAGCGCATTAAACAGCTCCTGTACCAGCTGCCTCCTCACGATAATGAAGTGCGGTACTGCCAGTCTCTGAGCGAAGAGGAGAAGAAGGAGCTGCACATGTTCAGCATACAGAGAAAGAAAGAGGCGCTGGGACGAGGAACGCTCAAAATACTGCCCCGCACCGTACATCATGCAGCGTGTGAACATTGTGGAGAGCGTCTCGGCGGGGGGGAGATGGCGGTGTGTGTGTCGCGGGCGGCAGCAGCAGGTCAGTGTTGGCATCCGGCCTGCTTCACCTGCTCCACCTGCTCGGAGCTCCTGGTGGATCTCATTTACTTCTATCATGATGGGAAAGTGCACTGCGGCCGACACCACGCTGAGCTCCTGAAGCCCCGCTGCTCCTCCTGTGATGAGATTATATTTGCGGATGAATGCACAGAAGCAGAAGGCCGGCACTGGCACATGAAGCACTTCTCCTGCAGTGAGTGTGAGGTTATTCTGGGTGGCCAGCGCTACATCATGAAGGACGGACGGCCGTTCTGCTGCGGGTGCTTCCAGTCGCTGTATGCCGAGTACTGCCAGGCCTGCGCACAGCACATCGGTGTGGATCATGCCCAGATGACGTATGACGGCCTTCACTGGCACGCCACAGATGCTTGTTTCAGCTGCGCTCAGTGTAAAAGCTCCCTGCTGGGCTGTCCGTTTCTACCCAGACAGGGCAGAATCTACTGCTCCAAAGCCTGCAGTTTGGGAGAAGATGTGCAGGCTTCAGACTCCTCCGATTCTGCCTTCCAGTCCGCCAGGTCCCGCGAGTCCCGCCGCAGTGTGAAGATGGGAAAAAGCAGTCGTTCCGCAGACCAGTGCCGACAGTCGCTTTTATTTTCACCCGCAAGCAACTATAAGTTCCCGGGACTCTCCGGAAACGCTGATGACACCCTGTCCAAACGGCTATCACAGCTAAACTTTGCTGATAATCACTTCTGGAGGAATAGAGAGGATCAGGAGGCTCCGGAAGACCACGAGGAATGGGCCGAACATGACGACTACATGACACAACTCCTGCTCAAATTTGGCGAGCACGGGATGTTTCAGGACACCAGGACTGATCTATCAATCTGGACGGATTCTGAGCTCAAGAATAAGACCGGCAGTGGTGGGAACAGCAGTCTGGCAAGTAAGAAATACAAGGCAGACATGTACTGGACTCAGTCCCAGGATGGGCTAGGAGACTCTGCGTACGGGAGCCACCCCGGTCCCGCCAGCAGCAGAAAGCTCCAGGATCTGGACCTGGAGCATGGAGCGAGCTTTAAACATGAAGACAATAAGCAGTGGTTTAATGACTCGCTAGAATGCATCACTGATCAACTTAAAGAAGCTGATCTGAACATCAGAGACTCCATGGACTCTTTAGCGCTCTCCAACATCACAGGTGCTTCAGTTGATGGCGATATTAAAGACAAGCCCTTGCTCTTCTCCCTACAAAAGTTCTCTGATCTGGATCGCTGTGAGAACACGAGTAACATGGGAACGCTGAACTCCTCGATGAAGAGCCTGACGTCTGATCTGGACCGAACTCAAGTGATAGAGGAACAGCAGGAGCAGGGCGTACCGAGCCCTGAGGTACACCCCAAACCACCGCGCTTACCTGTGCTGAGAAGATCAAAGTCCCAGTCCAAAACACAGCAGGTGAAGTTCTCTGATGATGTCATAGATAACGGGAGATACGATGAGCTGAAGGTTCGACAGCCGCCAATGAGCGAACGAACTCGTAGACGAGCATTTCAGTTTGACGAACAAGATCATCAGCGGCCGCGGCATcaccacagaagaagaagaagccgcATGTCTCGGTCGGATAACGCACTTCATTTGGCACCAAAAGAAGAAAAGCCTCGGGTTTGCTTTAAAGATGATCGTCGGAAGCATGGATTGGGTCATAATGGCGCTCAGTATGGCGACGGTTTGCGTACGGAGAGATTTACACGTCTTTATGAAGACGATTGGTGCTCCACGTGCTCTTCCTCATCGTCAGAATCAGAAGAGGAAGGGTTTTTTTTGGGTCAGCCGATTCCTCAACCTAGACAACCTCGGTACCAGTATTACGCTTCAGATGAAGCTGCTTTCGGCACAAGGACAAAGTCCAAACAGAAGAGAGGACGGAAAGGCAAAAACTGTATTATTTCATAAGACAAAATAAAGCTGAGTGATGTTTGATTCAGTTGATCTGCATCTGAATGGcaaagcttttattttgaaataatgttTTGAGAGCGAGCGCATTGTGTCATAATCTGAAGGCCACGCCCACTTTGAGAGAGGGGGGGGGCAATCTAACACAGTCAATTGACTTTGTATTGATGTGAACAGTAAAATAATcagtattacatttttattagctTTCAACCCCCAAAAATTAGCATAATATTGACACAAAAGTCGGGtgaaaggaaaaataaaataaaacaaaagttatgtGCCTTTgtttatgaaaacaaataaaacaatgaatgtatgtgttattatattacaaaaaatgtgttttacaaaacatttttagcCTAAAATTGACTAAATAAATCAGAGCTAAATATCTAAACAAATTATATTCCAAATGTAAGGTTGATATCTCGAAAAATAAGAGCTTTTAGCAAGATTTAGTTTGGCTGCAGTACCACACATGACCACCAGTTTCCATTGATGGACATGCAACAGCGCCCCCAacgttttgacaatatttttaaagtgcactaaAAAATGTTAgatcttttgtcttgtttctagtccaaatatctaaaaattcttaaatcaagaagaattttctacacAAGCGAAACATAAAGTCTTGTTtccagaaataatatgccaaaattatgCAAGTTTTTTCTtaatacaagcaaaataatctgccaatggggtgagcaaaataatcttatgtcaaaaggagaAACAAGagtatttagcttgttttaaggaaaattttacttagtttttacttatttttttctgaaaacatgactttatgttttgcttgcctagaaaatgcttcttgataaaGTTTTTCGATGTTTACAATAGAAAgaggacaaaaaaatctaagtgagAAAAGCATGTTTTGCAGTGTAGATGTCACATTCTAAGGATGTATGAGCAGTATGGTGGCTCTTGAGTTGAATTTAGCCTAACTAAATGTTTatatgtggattgctgtagcaaagtaatttTTGTTGCAGTATTCTTcttgcaaattaataaataactcttGCTCAGTAATATCTATCAAAAACCAATCACTAGATACAGAAACTAGACATTAAAAGCTTTCAATTGATAAACTGTCATGATTGCTTTATGTTAAGACTACAATATTATAGTTTAAAATGTAACAGTAAACACTCCCACAGGTTAAAAGCTGACAGTAAATGTTCTTTAATATGTTAATCTCACTACATAACAATAAACAGGGATAAAACATGCAGTCAGAAGCCTCAGACAGTTAATAAAACAGTTGATCGTGATTAGATTAGGATATAACTGAAATAATGTAAACTTAATCGTCCCAATAGCAGGGTGGTCACAGTTAAAAAGGCTTTGGCTGCTTATTATAAGCGTAATTCTCATTTCTGTTTAGCTTGTTTGCAGTACACATCACACAGCAGCTTTTAGGAATAGTTCTATTGTTtataacaagttataaatgataTTAAGGCATGTTCCAGCAATAGAAAGTCAATGGAGTTGATTGGATTGTTTTTCCCACCCTGGTGTGGGCGTGGCCTAAATGTGCTCGTCTCGATTGCAGTGgttttcatagatatttacattagatgtcgcctatgctattgttgtctattgaaaGGAATGTGCCAATagagccgccatcttggtacaggcaagcgctcctttgaaatgaatgtgggaccaaggtgcagtggtgGATTGGCTATGTtgagccagagatatatacacacatatctcTATGATTGTGGTCAGTATGTTATTCtagttttacatcacttttctagaTCGATGGATAAGTGATCGCACGGGCATTTCCCATTGTTTGTCTGCATGTATTCACCTCCCTCTTAAATAAGCACAagagtccagcatcttcagactGACTTTACTCTTGACTTGGTGGAGTTATACACTTTTGTcatgggagcactgtacaaatatggcggcggtGTTCACGCATGCTTAGGGCCTCTATGCGtatatctaatgtaaatatctgtgATTGGTTTTGCTAGTCTTCCCATGCAGTAATttctttaataatgcatttaataagTGATGTAGTCTTTGAAAGATCCAGaggaatataatatttataaagccGCCGCTTTTAGAGACTAATGGAGTGGTAATTTAACTCTTTTGCGAAAGTGaatgtgtatatactgtaaaatgcTCATATTTTTATATCCCTGAGTTACAAAAGATGTTTTTTAAAGAGTGTTACTGAACCAAACATGTACTACAGGACTGATTCTGCAGCGGATAGGCTTTTGTTAATCagggttttaaaaataaatcaatacatgCAGGCCAGGGTCAGCTTTGCCACTATTGTACGCTGCATATAATAATCCAGTGTTATTTTATTGATGGGTCAAACAGTGTTAATGCTAACTGGAACATAAGGCTAATAATAAAAGGGAGATATGGAggagtttatgcacattttgggtTTGCTTTAATTCTGTAATCTACATTAATACACTTATTTATGGGC

Function

symbol description
prickle1a Predicted to enable zinc ion binding activity. Acts upstream of or within several processes, including animal organ development; gastrulation; and generation of neurons. Is expressed in several structures, including central nervous system; ectoderm; eye; mesoderm; and pharyngeal arch. Human ortholog(s) of this gene implicated in progressive myoclonus epilepsy 1B. Orthologous to human PRICKLE1 (prickle planar cell polarity protein 1).

GO:

id name namespace
GO:0042074 cell migration involved in gastrulation biological_process
GO:0021535 cell migration in hindbrain biological_process
GO:0001755 neural crest cell migration biological_process
GO:0001764 neuron migration biological_process
GO:0003407 neural retina development biological_process
GO:0071907 determination of digestive tract left/right asymmetry biological_process
GO:0071910 determination of liver left/right asymmetry biological_process
GO:0000132 establishment of mitotic spindle orientation biological_process
GO:0035622 intrahepatic bile duct development biological_process
GO:0070121 Kupffer's vesicle development biological_process
GO:0060027 convergent extension involved in gastrulation biological_process
GO:0001947 heart looping biological_process
GO:0031175 neuron projection development biological_process
GO:0016055 Wnt signaling pathway biological_process
GO:0005515 protein binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030724-5 Predicted to enable zinc ion binding activity. Acts upstream of or within several processes, including animal organ development; gastrulation; and generation of neurons. Is expressed in several structures, including central nervous system; ectoderm; eye; mesoderm; and pharyngeal arch. Human ortholog(s) of this gene implicated in progressive myoclonus epilepsy 1B. Orthologous to human PRICKLE1 (prickle planar cell polarity protein 1).

Ensembl:

ensembl_id ENSDARG00000040649

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00048182 True 5108 mRNA 0.44 8 314608 348784

Neighbor

gene id symbol gene type direction distance location
XLOC_024361 NA coding downstream 8951 305008 ~ 305657 (-)
XLOC_024360 NA coding downstream 19999 287659 ~ 294609 (-)
XLOC_024359 NA coding downstream 37245 276131 ~ 277363 (-)
XLOC_024358 NA coding downstream 38505 272458 ~ 276103 (-)
XLOC_024357 CABZ01072254.1 coding downstream 45324 265360 ~ 269284 (-)
XLOC_024363 NA coding upstream 11754 360538 ~ 363768 (-)
XLOC_024364 szl coding upstream 22380 371164 ~ 375882 (-)
XLOC_024365 CU633775.2 coding upstream 101559 450343 ~ 492549 (-)
XLOC_024366 NA coding upstream 106535 455319 ~ 456478 (-)
XLOC_024367 si:ch1073-385f13.3 coding upstream 131213 479997 ~ 483808 (-)
XLOC_024349 NA non-coding downstream 148628 160873 ~ 165980 (-)
XLOC_024369 NA non-coding upstream 282149 630933 ~ 643106 (-)
XLOC_024375 CU861469.1 non-coding upstream 846498 1195282 ~ 1196112 (-)
XLOC_024380 CR354429.1 non-coding upstream 1115595 1464379 ~ 1471185 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000123_00249557_00254789 PRICKLE1, PRICKLE1A coding CI01000123 null 249080 ~ 254789 (-)
bowfin (Amia calva) AMCG00006582 NA coding CM030134.1 CM030134.1 10182177 ~ 10198686 (-)