XLOC_024364 (szl)


Basic Information

Item Value
gene id XLOC_024364
gene name szl
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007136.7
NCBI id CM002909.2
chromosome length 37502051
location 371164 ~ 375882 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00048183
ATGTCTCTATTCAGTCTGCTGCTGTTTTTCTCTCTCGCGGCCCACACCGGAGCCTTCGACCTGGGCCAGACCACCCGCTGCGTCCCCATCCCGCCACAGATGAGCGTCTGCCAGGATGTCCCGTACTCAGAGATGCGTTTACCCAACCTGCTGGGTCACGGCAGTCTGGAGGAAGCGGCTCCTCGATCTGACGACTTGAGGACCCTGCTGCACACTGGCTGTCACCCGCAGGCCCGGGCCTTCGTCTGCTCGCTCATCGCCCCTGTATGCCTCGACAGGTTCATCCAGCCATGCCGGAGTGTGTGTTTGGCAGTAAAGGAGAGCTGCAGTCCCGTTCTAGCCTGTCACGGACACTCCTGGCCTGAATCACTAAATTGTGAGCGATTCCCGGAGCAGGACGACTGTCTGACGCCGCTGCCCAAACACATCAGTGCTTTCTCCAAAGagttCCCTCAGCCAGCATGTCAGAGCTGTCCATCAGTCCAGGAGTCTCCGTCACTCAAAACCCTGCTGGACTCGCTCTGCCTCAACGACTTCGcgGTGAAGGTGAAGATCATGCGTCGGCGTGTGCCGTCTTCCGAGCCggagtttacagtagagggcgcTGTGGAGCTGATCGAGCGCGGGCCGCTAATGCCCTATGACACCGCTAGTCTGCTGCAGCGCTGGATGCTAATCAACCTCCGCTGTGCGCATGCGCTAGTCAGACCCGGCCGTGCGCAGTTATACCTCATCACCGGGAAAATGCGTGCTGGTGGATCCATCGAGATCGCTAATCTGTTCCCGTGGCTGAAGAAAGACTTGCACATCGCCACGGCAACACGCAAGTGGAAACACTACAAGTGCTGAGAGAAAGCGCaacttatgtatatatttataaaaatatagaaaaaagacTTTGAAGAGTGATGTGAAGTCCAGATGTTgagcttttatttcagtatgttgacgtacttccaactgaaactgaatattaagcAGGGGGGTGGGGCTTATTTTTGCGCATCATTCACTAGTAGCAATCTAActgtaagaggggcgtggctacaAATAAGAGGGGTGTGGTTATGGATAAGACAGGTGTGTCTACAAATAAGAGGGGTGTGGTTATGCATAAAAGGGGTGTGGCTAAGAATATAGTCACTTTGTTCGAATTGCAGATgcagattaccaaaacaaacatttcaagtttttttaaaaaagtggatTTTAAGCGCAAATGGTATTGTACctcacatttttattcatttttgcttACAATATTGTGCCCTAGATatgatttaacacacacacacacacacacacacacagctctttgATCTCAGACTTGAGATGCACTCCAACTGTTGTACATAGagatgaaatattattattattttctattcagATGTAATTTGTAAAGATATTCAGATGTATAAGTGTATTGTATGTctgttggttgttgttgttgttgtgctgtaaataataaatgtttttaaactatatCACTGTGTTTCTGACGGGTTTCCGACTGTAAAGTTTCTCTTCTGTGGTTTGGGATTGAGATTTTTCCCTTTCACTAAAAAGtttgatattaaattacagattgTTATAAGAATATAGTGAAGGGTAATTTATGTTCAGAGTCATGATCGTTCAGAATTATAATATGATTATGAACCAGTTCTGATTATTATCAATGATGGAAGCAGctatacttgttttatttaatgaataaaatgtcaaaacaa

Function

symbol description
szl Predicted to enable Wnt-protein binding activity. Acts upstream of or within several processes, including determination of dorsal identity; negative regulation of BMP signaling pathway; and protein stabilization. Predicted to be active in extracellular space. Is expressed in ectoderm; mesoderm; periderm; and tail bud.

GO:

id name namespace
GO:0060070 canonical Wnt signaling pathway biological_process
GO:0035567 non-canonical Wnt signaling pathway biological_process
GO:0007275 multicellular organism development biological_process
GO:0048263 determination of dorsal identity biological_process
GO:0090090 negative regulation of canonical Wnt signaling pathway biological_process
GO:0030514 negative regulation of BMP signaling pathway biological_process
GO:0009953 dorsal/ventral pattern formation biological_process
GO:0048066 developmental pigmentation biological_process
GO:0050821 protein stabilization biological_process
GO:0016055 Wnt signaling pathway biological_process
GO:0005615 extracellular space cellular_component
GO:0005515 protein binding molecular_function
GO:0017147 Wnt-protein binding molecular_function

KEGG:

id description
ko01002 Peptidases and inhibitors

ZFIN:

id description
ZDB-GENE-030530-1 Predicted to enable Wnt-protein binding activity. Acts upstream of or within several processes, including determination of dorsal identity; negative regulation of BMP signaling pathway; and protein stabilization. Predicted to be active in extracellular space. Is expressed in ectoderm; mesoderm; periderm; and tail bud.

Ensembl:

ensembl_id ENSDARG00000099637

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00048183 True 1730 mRNA 0.46 4 371164 375882

Neighbor

gene id symbol gene type direction distance location
XLOC_024363 NA coding downstream 7396 360538 ~ 363768 (-)
XLOC_024362 prickle1a coding downstream 22380 314608 ~ 348784 (-)
XLOC_024361 NA coding downstream 65507 305008 ~ 305657 (-)
XLOC_024360 NA coding downstream 76555 287659 ~ 294609 (-)
XLOC_024359 NA coding downstream 93801 276131 ~ 277363 (-)
XLOC_024365 CU633775.2 coding upstream 74461 450343 ~ 492549 (-)
XLOC_024366 NA coding upstream 79437 455319 ~ 456478 (-)
XLOC_024367 si:ch1073-385f13.3 coding upstream 104115 479997 ~ 483808 (-)
XLOC_024368 myo9ab coding upstream 109471 485353 ~ 554142 (-)
XLOC_024369 NA coding upstream 255051 630933 ~ 643106 (-)
XLOC_024358 NA non-coding downstream 95061 272458 ~ 276103 (-)
XLOC_024375 CU861469.1 non-coding upstream 819400 1195282 ~ 1196112 (-)
XLOC_024380 CR354429.1 non-coding upstream 1088497 1464379 ~ 1471185 (-)
XLOC_024381 NA non-coding upstream 1248998 1624880 ~ 1625918 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G339928 NA non-coding CI01000127 null 106397 ~ 110863 (+)