XLOC_024933 (FP102809.1)


Basic Information

Item Value
gene id XLOC_024933
gene name FP102809.1
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 906519 ~ 909941 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00049473
TAGATTCATTATTATGTAACACTCTGTGCACTCGTTAATGCAAGTGTGTGTTCTGTGATTTATAACAGGATCTTCCTTGAACTGAAAGATGCAGAACATCTCTAAGGTGTGTGCGGACATTCAGACTGAGTGTGGATATGAATACAGAGTGAGGGAGGATTTACTGGAGCTAATACACAATCCTGACTGTGATCAGAGCTGGTTTACAAAGGACGGGCGTCTGCTAGCAGATCCTTCAGATCCTCATAAACGGATGCCTCCAGCTGTTTCTGTGAGGCCTGAACAGCTCTGCACTTCATTCTGTGTGGAGGAAATCCACCATGAGATTGACTGTCATTACAGTAGAGTAAatcagcatctctctctctctctccctctccctctctctctccctctctgtctctctctctctctctcatcatgTGTTGTGTTTCTGTGCTGTTTAACAAGCACTAGTGCTGATGATGGTGAATGATGCTCTGCTCTGTCCTTCATTACAGCTCAAACACCAGACGCTGTTCAGAGTGTTTAATGTCACAGAGCCCATCAGCGGATCCACTGCAGAATCACGTGAGTCTGAAATATCTGAGCAAATATAAGTAATAAACACAGAATCCAGCAAATAATGTGTGCATTAGTGCTTCAGCTGATCAGATTATGGTGTAGGTCAGCTGCTTTTGTATTTTACAGATGATTTGTGGTGGATTTTAGCCCCTATCTTAGTTtttttcttcatcatcatcctcattgtCTGCCTCATGTGGCGTAAAAAGATCTCCAGGTGAGTCTCGAGTCTTGTATTTGGGTGAAGAAATGTAAATATGCAAGCTAAATAGAGAGGCTGACATTATAGCTGAAGATATTATTGATGATTTCACCGCTTTATAATACTGTGACATGTTTGGTAGTCATGAATAATGATCAAATCAGTAGCCTAAACAGTTAAATCTCTCTCTAAAATAACATACtactatacaatattattatgGAAGTATTTAATAATTGGACTGATTTATGTATTTCAGCTGTATTTCAAGAGCAGCACGCAGTGGTCCAGCAAACAGGTCAGTGAATCAACCTGACAGAAATAGTTAAACTGAATCAGAACAGTGGTAAAGATTCATTTGACTCAGTGAATCTTTTCTTTCAGGAATCCTGAATCTGGAGTCCAAATGAAGCTTCTGTGACCTGAATCTGAATCTGAGCACATCCAGAAGATCATCAGGGCGATTCAGAGATTCAGTAATGTgacacaaaaccagtcataagggtCAACGTTTTtgtttaaagttgtttttaaattaagCTATTAGCAAgccaacatttaatatttttacaatagtaAATTTGGAAAATGATGATCTTAACTTAAGATTTGAATGATTTACTGCTCATAAGATGATCTTTATAATCTCAATATGATGTGTTTTGGCTTCTCCGACAAATGTCTTTGCAGtgtaagactggttttgtgcttCTGTGGATTTTCCACATTTACTGCAGGAATAAATTTCCTATCATAAGGACCATCTTGcttaacatttttattgtattatgtttTCCATTTGCTTGCTGAACACCATCATTTGCTCCAGACTTGTGTATTAAACACACGACTCGCTGATGTGCACAGTGGCGCTTCTAGTTTAAATGGGACCCTGAGTGAACCACCCCATATAGTCCTTTCTGCTTCACAGTCATGCTTAGCCAAAATAAcctcatcatcatattatatatatatatatatatatatatatatatatatatataaatctcccttggtaggcgtccaggaggcatctgaaacaga
>TCONS_00049474
GATCTTCCTTGAACTGAAAGATGCAGAACATCTCTAAGGTGTGTGCGGACATTCAGACTGAGTGTGGATATGAATACAGAGTGAGGGAGGATTTACTGGAGCTAATACACAATCCTGACTGTGATCAGAGCTGGTTTACAAAGGACGGGCGTCTGCTAGCAGATCCTTCAGATCCTCATAAACGGATGCCTCCAGCTGTTTCTGTGAGGCCTGAACAGCTCTGCACTTCATTCTGTGTGGAGGAAATCCACCATGAGATTGACTGTCATTACAGTAGACTCAAACACCAGACGCTGTTCAGAGTGTTTAATGTCACAGAGCCCATCAGCGGATCCACTGCAGAATCACGTGAGTCTGAAATATCTGAGCAAATATAAGTAATAAACACAGAATCCAGCAAATAATGTGTGCATTAGTGCTTCAGCTGATCAGATTATGGTGTAGGTCAGCTGCTTTTGTATTTTACAGATGATTTGTGGTGGATTTTAGCCCCTATCTTAGTTtttttcttcatcatcatcctcattgtCTGCCTCATGTGGCGTAAAAAGATCTCCAGGTGAGTCTCGAGTCTTGTATTTGGGTGAAGAAATGTAAATATGCAAGCTAAATAGAGAGGCTGACATTATAGCTGAAGATATTATTGATGATTTCACCGCTTTATAATACTGTGACATGTTTGGTAGTCATGAATAATGATCAAATCAGTAGCCTAAACAGTTAAATCTCTCTCTAAAATAACATACtactatacaatattattatgGAAGTATTTAATAATTGGACTGATTTATGTATTTCAGCTGTATTTCAAGAGCAGCACGCAGTGGTCCAGCAAACAGGTCAGTGAATCAACCTGACAGAAATAGTTAAACTGAATCAGAACAGTGGTAAAGATTCATTTGACTCAGTGAATCTTTTCTTTCAGGAATCCTGAATCTGGAGTCCAAATGAAGCTTCTGTGACCTGAATCTGAATCTGAGCACATCCAGAAGATCATCAGGGCGATTCAGAGATTCAGTAATGTgacacaaaaccagtcataagggtCAACGTTTTtgtttaaagttgtttttaaattaagCTATTAGCAAgccaacatttaatatttttacaatagtaAATTTGGAAAATGATGATCTTAACTTAAGATTTGAATGATTTACTGCTCATAAGATGATCTTTATAATCTCAATATGATGTGTTTTGGCTTCTCCGACAAATGTCTTTGCAGtgtaagactggttttgtgcttCTGTGGATTTTCCACATTTACTGCAGGAATAAATTTCCTATCATAAGGACCATCTTGcttaacatttttattgtattatgtttTCCATTTGCTTGCTGAACACCATCATTTGCTCCAGACTTGTGTATTAAACACACGACTCGCTGATGTGCACAGTGGCGCTTCTAGTTTAAATGGGACCCTGAGTGAACCACCCCATATAGTCCTTTCTGCTTCACAGTCATGCTTAGCCAAAATAAcctcatcatcatattatatatatatatatatatatatatatatatatatatataaatctcccttggtaggcgtccaggaggcatctgaaacaga
>TCONS_00052520
TAGGACGGGCGTCTGCTAGCAGATCCTTCAGATCCTCATAAACGGATGCCTCCAGCTGTTTCTGTGAGGCCTGAACAGCTCTGCACTTCATTCTGTGTGGAGGAAATCCACCATGAGATTGACTGTCATTACAGTAGACTCAAACACCAGACGCTGTTCAGAGGTGAGAGAAACTCTTCACTATCAGCTAAATGTTTATTACCATCCTCAAACACAGGGCTCAGCATGAAATATCAATACACA
>TCONS_00052302
attattattattattattattattattattattattattattatcattattaatgattatttctGCTTTTCAGTGTTTAATGTCACAGAGCCCATCAGCGGATCCACTGCAGAATCACATGATTTGTGGTGGATTTTAGCCCCTATCTTAGTTtttttcttcatcatcatcctcattgtCTGCCTCATGTGGCGTAAAAAGATCTCCAGCTGTATTTCAAGAGCAGCACGCAGTGGTCCAGCAAACAGGAATCCTGAATCTGGAGTCCAAATGAAGCTTCTGTGACCTGAATCTGAATCTGAGCACATCCAGAAGATCATCAGGGCGATTCAGAGATTCAGTAATGTgacacaaaaccagtcataagggtCAACGTTTTtgtttaaagttgtttttaaattaagCTATTAGCAAgccaacatttaatatttttacaatagtaAATTTGGAAAATGATGATCTTAACTTAAGATTTGAATGATTTACTGCTCATAAGATGATCTTTATAATCTCAATATGATGTGTTTTGGCTTCTCCGACAAATGTCTTTGCAGtgtaagactggttttgtgcttCTGTGGATTTTCCACATTTACTGCAGGAATAAATTTCCTATCATAAGGACCATCTTGcttaacatttttattgtattatgtttTCCATTTGCTTGCTGAACACCATCATTTGCTCCAGACTTGTGTATTAAACACACGACTCGCTGATGTGCACAGTGGCGCTTCTAGTTTAAATGGGACCCTGAGTGAACCACCCCATATAGTCCTTTCTGCTTCACAGT

Function

GO:

id name namespace
GO:0006892 post-Golgi vesicle-mediated transport biological_process
GO:0005794 Golgi apparatus cellular_component
GO:0005798 Golgi-associated vesicle cellular_component
GO:0044444 obsolete cytoplasmic part cellular_component
GO:0012505 endomembrane system cellular_component

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000117639

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00049473 False 1810 lncRNA 0.38 3 906519 909941
TCONS_00049474 False 1588 lncRNA 0.38 4 906587 909941
TCONS_00052520 False 243 lncRNA 0.46 2 906871 907267
TCONS_00052302 True 796 lncRNA 0.36 4 908584 909829

Neighbor

gene id symbol gene type direction distance location
XLOC_024932 FP102786.1 coding upstream 32824 866044 ~ 873695 (+)
XLOC_024931 FP102888.2 coding upstream 51889 842733 ~ 854630 (+)
XLOC_024930 FP102888.3 coding upstream 70384 832788 ~ 836135 (+)
XLOC_024929 FP102888.1 coding upstream 77086 823084 ~ 829433 (+)
XLOC_024927 AL929520.3 coding upstream 106204 709393 ~ 800315 (+)
XLOC_024934 NA coding downstream 15742 925683 ~ 934071 (+)
XLOC_024935 irgf4 coding downstream 28497 938438 ~ 945007 (+)
XLOC_024936 NA coding downstream 76940 986881 ~ 988055 (+)
XLOC_024937 zgc:172051 coding downstream 95118 1005059 ~ 1012673 (+)
XLOC_024938 si:ch1073-464p5.5 coding downstream 105926 1015867 ~ 1029876 (+)
XLOC_025429 BX649540.1 misc downstream 29338798 30248739 ~ 30249036 (+)
XLOC_024926 NA non-coding upstream 142832 707084 ~ 763687 (+)
XLOC_024922 NA non-coding upstream 382697 522658 ~ 523822 (+)
XLOC_024921 NA non-coding upstream 431555 472181 ~ 474964 (+)
XLOC_024918 CU394254.3 non-coding upstream 483781 420342 ~ 422738 (+)
XLOC_024941 NA non-coding downstream 186863 1096804 ~ 1106313 (+)
XLOC_024943 NA non-coding downstream 222997 1132938 ~ 1135740 (+)
XLOC_024947 CU672266.2 non-coding downstream 277303 1187244 ~ 1191342 (+)

Expression


Co-expression Network