XLOC_024943


Basic Information

Item Value
gene id XLOC_024943
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 1132938 ~ 1135740 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00052525
CTTGGATTAAACTGCATTGTGCATTTCACATGTGCAGTCATATAATAGCACATAAAACAATCCAAACTCATATTTAACAGTAGAGGAGTTACACACAGacgcagaacacacacactttccaTTATAGTTGTGgattttccattttatacaggaGCTCACATCAGTCTCGAGTCCAACTGCAGTTCTCTAGAATCATGGACGAGGTTTCATCTTCATACAGGCAAAGCAAACATAACTCGGACAGCAGATATTATTAACCGCTGAATATCCGGGAGCATCAGTTATCCTGACGCTTAACCTGAGCATGAGTTCTGCAGTGTTTCCCTCTGTACTGCTGAAGTCTGAGCAATGTTAGACAGTGTGTGGATGACGGTGATCATATATAATCATGAACCTGTTGAACAGCTGACCATCTCTGGTTTATTGTAATCCATTACATATAAAACTCTATCAAAAATGAGTGAGAATAACCTGACAGATGAACAGAGATGGATGAATATGTAGACAGAATAACAGGCAGAGAACATTAAACAGGAACTGAGTGAATAACATGACAGCATTATAAACTGCTATGAACATCCATATTTATCATACGGACTTATTGAAACAAATTGTACATTATTAAATATAGGaacaaatgtatttacatttcacCACACTGCAGCCTCCTGCACCTGCTGTACGCAGAGTGTCCACTGGCGGCGCTGGTGTGACGAGTTCAGGTATGAATGCAGAGTCACTTGAAGATCGTCCAACAGTCTATATAGCGGTGTTCTCATCTTCAGGTGTGTCTATACTCCACTGATGATTTTGAGGTGACTACAGCAGTTTTACCATCTTCATACATCACTATATCAGTTATATCTTTAAGCTTTACTGCGGTTTGATGATCTTAGAATTTTAAATCATCAAACTACTGTAGAGTAAAACTTGAAGATCGTCGAACCGACATACAGGAGTTTAACAATCAAAAGGCATGACTATATCGGTTTGATGATCTTTGGACATGACTATATGTTTGACGATCTATCAGTATTACTCTACGTACTAGCGTGACTATATCAGTTTGACCATCTTCAGACGTGACTATATATCAGTTTGACGATCTTCAGACGTGACTATCGGTTTGACGATCTTCAGACGTGACTATATATCAGTTTGACGATCTTCAGACGTGACTATATATCAGTTTGACCATCTTCAGACGTGACTATATATCAGTTTGACCATCTTCAGACGTGACTATATATCGGTTTGATGATCTTCAGACGTGACAATATATATCAGTTTGACCATCTTCAGACGTGACTATTGGTTTGACGATCTTCAGACGTGACTATATATCGTTTGATGATCTTCAGGTGTGACTATATCAGTTTGATGATCTTCAGACGTGACTATATATCGGTTTAATGATCTTCAGGCGTGACTATATATCGGTTTGACGATCTTCAGACGTGACTATATATCGGTTAGATGATCTTCAGACGTGACTATATATCGGTTAGATGATCTTCAGATGTGACTATATATCAGTTTGACGATCTTCAGACGTGACTATATATCGGTTAGATGATCTTCAGACGTGACTATATATCAGTTTGACGATCTTCAGACGTGACTATATATCAGTTTGACCATCTTCAGACGTGACTATATATCAGTTTGACGATCTTCAGACATGACCCTATATTGATTTGATGATCTTGAGTCATAACTCTACAGCGGTTTGACAGTCTATAGGCATGACTCTATATGAGTTTAAAGATCTCCAGCTCTGACTCTATATGGGTTTGATGGTCTTGAGCTCTGAGTGCTCGGGCAGCAGTGTGGGGATTTCTGGCAGAGAGTAAAGGCTAGAGTTGAGGAAGGGCTCCTGTAGAGAGACCGCTGTGCAGAGGGACTGGAGGCTGCCGGCGCTCTGCAGATTCCTCTTATAGGCTGTGATGCGGTTATAGATGAAGAACTTCAGGCTCTTCCAGTCCCGGTTCCGCAGCGCCTCGGGCTCGGCCTGTAAGCAGCTCTCGCAGTGGCTCTTAGCGGGAACCGTACAGGATGTGATGAAGTTCATCATGTGCCGCTCCACCGCCTGCACCTCGGTCTGCTGCCACGGCTGCTTCTTCTGCACACGCT
>TCONS_00052524
CTTGGATTAAACTGCATTGTGCATTTCACATGTGCAGTCATATAATAGCACATAAAACAATCCAAACTCATATTTAACAGTAGAGGAGTTACACACAGacgcagaacacacacactttccaTTATAGTTGTGgattttccattttatacaggaGCTCACATCAGTCTCGAGTCCAACTGCAGTTCTCTAGAATCATGGACGAGGTTTCATCTTCATACAGGCAAAGCAAACATAACTCGGACAGCAGATATTATTAACCGCTGAATATCCGGGAGCATCAGTTATCCTGACGCTTAACCTGAGCATGAGTTCTGCAGTGTTTCCCTCTGTACTGCTGAAGTCTGAGCAATGTTAGACAGTGTGTGGATGACGGTGATCATATATAATCATGAACCTGTTGAACAGCTGACCATCTCTGGTTTATTGTAATCCATTACATATAAAACTCTATCAAAAATGAGTGAGAATAACCTGACAGATGAACAGAGATGGATGAATATGTAGACAGAATAACAGGCAGAGAACATTAAACAGGAACTGAGTGAATAACATGACAGCATTATAAACTGCTATGAACATCCATATTTATCATACGGACTTATTGAAACAAATTGTACATTATTAAATATAGGaacaaatgtatttacatttcacCACACTGCAGCCTCCTGCACCTGCTGTACGCAGAGTGTCCACTGGCGGCGCTGGTGTGACGAGTTCAGGTATGAATGCAGAGTCACTTGAAGATCGTCCAACAGTCTATATAGCGGTGTTCTCATCTTCAGGTGTGTCTATACTCCACTGATGATTTTGAGGTGACTACAGCAGTTTTACCATCTTCATACATCACTATATCAGTTATATCTTTAAGCTTTACTGCGGTTTGATGATCTTAGAATTTTAAATCATCAAACTACTGTAGAGTAAAACTTGAAGATCGTCGAACCGACATACAGGAGTTTAACAATCAAAAGGCATGACTATATCGGTTTGATGATCTTTGGACATGACTATATGTTTGACGATCTATCAGTATTACTCTACGTACTAATGTGACTATATATCAGTTTGACGATCTTCAGACGTGACTATATATCGGTTAGATGATCTTCAGACGTGACTATATATCAGTTTGACGATCTTCAGACGTGACTATATATCAGTTTGACCATCTTCAGACGTGACTATATATCAGTTTGACGATCTTCAGACATGACCCTATATTGATTTGATGATCTTGAGTCATAACTCTACAGCGGTTTGACAGTCTATAGGCATGACTCTATATGAGTTTAAAGATCTCCAGCTCTGACTCTATATGGGTTTGATGGTCTTGAGCTCTGAGTGCTCGGGCAGCAGTGTGGGGATTTCTGGCAGAGAGTAAAGGCTAGAGTTGAGGAAGGGCTCCTGTAGAGAGACCGCTGTGCAGAGGGACTGGAGGCTGCCGGCGCTCTGCAGATTCCTCTTATAGGCTGTGATGCGGTTATAGATGAAGAACTTCAGGCTCTTCCAGTCCCGGTTCCGCAGCGCCTCGGGCTCGGCCTGTAAGCAGCTCTCGCAGTGGCTCTTAGCGGGAACCGTACAGGATGTGATGAAGTTCATCATGTGCCGCTCCACCGCCTGCACCTCGGTCTGCTGCCACGGCTGCTTCTTCTGCACACGCT

Function

GO:

id name namespace
GO:1902093 positive regulation of flagellated sperm motility biological_process
GO:0097225 sperm midpiece cellular_component
GO:0004995 tachykinin receptor activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00052525 False 2133 lncRNA 0.42 2 1132938 1135740
TCONS_00052524 True 1664 lncRNA 0.42 3 1132938 1135740

Neighbor

gene id symbol gene type direction distance location
XLOC_024942 srebf2 coding upstream 2046 1107102 ~ 1130892 (+)
XLOC_024941 NA coding upstream 26625 1096804 ~ 1106313 (+)
XLOC_024940 zgc:153921 coding upstream 71215 1037946 ~ 1061723 (+)
XLOC_024939 zgc:172253 coding upstream 96394 1030479 ~ 1036544 (+)
XLOC_024938 si:ch1073-464p5.5 coding upstream 103062 1015867 ~ 1029876 (+)
XLOC_024944 nol12 coding downstream 14608 1150348 ~ 1156033 (+)
XLOC_024945 triobpb coding downstream 31286 1167026 ~ 1180520 (+)
XLOC_024946 ndufa6 coding downstream 46575 1182315 ~ 1186100 (+)
XLOC_024947 CU672266.2 coding downstream 51504 1187244 ~ 1191342 (+)
XLOC_024948 poldip3 coding downstream 73266 1209006 ~ 1218227 (+)
XLOC_025429 BX649540.1 misc downstream 29112999 30248739 ~ 30249036 (+)
XLOC_024936 NA non-coding upstream 144883 986881 ~ 988055 (+)
XLOC_024934 NA non-coding upstream 198867 925683 ~ 934071 (+)
XLOC_024933 FP102809.1 non-coding upstream 222997 906519 ~ 909941 (+)
XLOC_024931 FP102888.2 non-coding upstream 278308 842733 ~ 854630 (+)
XLOC_024951 NA non-coding downstream 99284 1235024 ~ 1236717 (+)
XLOC_024952 FP325358.1 non-coding downstream 124620 1260360 ~ 1268825 (+)
XLOC_024954 CR394546.3 non-coding downstream 418562 1554302 ~ 1682090 (+)
XLOC_024955 CR394546.1 non-coding downstream 437110 1572850 ~ 1597978 (+)

Expression


Co-expression Network