XLOC_024948 (poldip3)


Basic Information

Item Value
gene id XLOC_024948
gene name poldip3
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 1209006 ~ 1218227 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00049494
GAGAACCAGCAGGCGCAGATATGGCGGACTTGTCTCTGGATGAAGTGATTCGTCGGCGCAGTTTTACCGCGAGAGGAGCCAGTAAGAGGCCTGTATATGGCAGAGGGGCGGGGCCACTGAACATGGCCTTTGATGCCCGGCAGAAGATTGGCAGTGGTGATGTCAGACAGAGGCTGGGAGTGGGTGGAGCCAGCGGGGGGAAACGCCTCCAGATTTCGGCTAGCGGAGCTGCAGTTCAGACTCTGTCGCGGCCGTCAGTGTTTCCGGTGAAGGACGCCAGGGAGAAGCTGGGCCAGAAAGACGCTCGGCTGCGGCTGCGGGGCCGAGGAGGTGGGACCAGTGCTGTGCAGAGCCGAGGGGGAGGGGCCAGTGCGATGCAGGACGCCCGGCTGATGATCAACCTGCgcaaacagcagcagcagcagccgtCCGCCAGCGGCCCCGCCCCAGCCTCCGCCCGGCCCAGCGGCCCCGGGGTCCCACACGTACACATACACAACACCAGCcctcgcgcacacacactcaccaccAGAGTGGGTGTGGCCTTACAGCCAGGGGGCGGGATCACAAAAGTTGTTGATGCACGTGATAGGTTGAGCTTGAAGAGGAGTGTCCCTACGACGTCCAATCAGAGCGCAGCGTCTCTAAAGATCACCAAAACCATCCAGcagagGCCTGTGGGAATGACCAGCGGCATCCGGATCAACGTCCCCAGTGCAGCACCTCCgCGTGTGTGTGCTGCTGCTGaagatgaggatgaggatgatgtCAGTGCTGTGATTCCCAGCAAACAGATGAAGATCACTGCTGCCAGCAGCCTGCAGACACGGgCGGGGCCTGTCTCTCTCTCCGCCCCCATCACTAAGGTGGTAAAGAACGACTCGTACACGCCCCCATCTGTCTCGGTGCCGCCCGCTCGCCCTGCACCCCGCCCCCCCACACAGAGCCTGCAGCCCGTCTCCAGGACGACCGTTACTACGCAGCCTGCGGGCAGAGACACCAGCgcccagacacacacacccacacagcctgTCTTCAGTCCTCTGGAAGGCACAAAGATCACCGTGACGAATCTCCACCCGCGGGTGACGGAGGAGGATATTGTGgagctgTTCTGTGTGTGTGGCGCACTCAAGCGGGCACGGCTGGCCAAAGTGGGCGTGGCTGAGGTGGTGTTTGTGCGCAAGGAGGATGCAGTCAGTGCCTACAGGAAGTACAACAACCGCTGTCTGGacgGTCAGCCGATGAAGTGTAATCTGCACATGCAGGGCAGCGTGATCACGTCTGACCAGCCCATCCTACTGAGGTTGAGTGATACTCCTGGTTCTCCGCTGTCCGCACAGAAggcctcctcctcttcctcctcccgctcctccaagtcCTCGTCTGCAGCTGAGGTGGACCCGCAGACCATCTTGAAGGCGCTCTTCAagtcttcctcctcctcctcctcttcctccagcCAGACGG
>TCONS_00049495
ACAGGCCTGTATATGGCAGAGGGGCGGGGCCACTGAACATGGCCTTTGATGCCCGGCAGAAGATTGGCAGTGGTGATGTCAGACAGAGGCTGGGAGTGGGTGGAGCCAGCGGGGGGAAACGCCTCCAGATTTCGGCTAGCGGAGCTGCAGTTCAGACTCTGTCGCGGCCGTCAGTGTTTCCGGTGAAGGACGCCAGGGAGAAGCTGGGCCAGAAAGACGCTCGGCTGCGGCTGCGGGGCCGAGGAGGTGGGACCAGTGCTGTGCAGAGCCGAGGGGGAGGGGCCAGTGCGATGCAGGACGCCCGGCTGATGATCAACCTGCgcaaacagcagcagcagcagccgtCCGCCAGCGGCCCCGCCCCAGCCTCCGCCCGGCCCAGCGGCCCCGGGGTCCCACACGTACACATACACAACACCAGCcctcgcgcacacacactcaccaccAGAGTGGGTGTGGCCTTACAGCCAGGGGGCGGGATCACAAAAGTTGTTGATGCACGTGATAGGTTGAGCTTGAAGAGGAGTGTCCCTACGACGTCCAATCAGAGCGCAGCGTCTCTAAAGATCACCAAAACCATCCAGagGCCTGTGGGAATGACCAGCGGCATCCGGATCAACGTCCCCAGTGCAGCACCTCCgCGTGTGTGTGCTGCTGCTGaagatgaggatgaggatgatgtCAGTGCTGTGATTCCCAGCAAACAGATGAAGATCACTGCTGCCAGCAGCCTGCAGACACGGgCGGGGCCTGTCTCTCTCTCCGCCCCCATCACTAAGGTGGTAAAGAACGACTCGTACACGCCCCCATCTGTCTCGGTGCCGCCCGCTCGCCCTGCACCCCGCCCCCCCACACAGAGCCTGCAGCCCGTCTCCAGGACGACCGTTACTACGCAGCCTGCGGGCAGAGACACCAGCgcccagacacacacacccacacagcctgTCTTCAGTCCTCTGGAAGGCACAAAGATCACCGTGACGAATCTCCACCCGCGGGTGACGGAGGAGGATATTGTGgagctgTTCTGTGTGTGTGGCGCACTCAAGCGGGCACGGCTGGCCAAAGTGGGCGTGGCTGAGGTGGTGTTTGTGCGCAAGGAGGATGCAGTCAGTGCCTACAGGAAGTACAACAACCGCTGTCTGGacgGTCAGCCGATGAAGTGTAATCTGCACATGCAGGGCAGCGTGATCACGTCTGACCAGCCCATCCTACTGAGGTTGAGTGATACTCCTGGTTCTCCGCTGTCCGCACAGAAggcctcctcctcttcctcctcccgctcctccaagtcCTCGTCTGCAGCTGAGGTGGACCCGCAGACCATCTTGAAGGCGCTCTTCAagtcttcctcctcctcctcctcttcctccagcCAGACGGCCAGCAGTGC
>TCONS_00049496
ATGGCCTTTGATGCCCGGCAGAAGATTGGCAGTGGTGATGTCAGACAGAGGCTGGGAGTGGGTGGAGCCAGCGGGGGGAAACGCCTCCAGATTTCGGCTAGCGGAGCTGCAGTTCAGACTCTGTCGCGGCCGTCAGTGTTTCCGGTGAAGGACGCCAGGGAGAAGCTGGGCCAGAAAGACGCTCGGCTGCGGCTGCGGGGCCGAGGAGGTGGGACCAGTGCTGTGCAGAGCCGAGGGGGAGGGGCCAGTGCGATGCAGGACGCCCGGCTGATGATCAACCTGCgcaaacagcagcagcagcagccgtCCGCCAGCGGCCCCGCCCCAGCCTCCGCCCGGCCCAGCGGCCCCGGGGTCCCACACGTACACATACACAACACCAGCcctcgcgcacacacactcaccaccAGAGTGGGTGTGGCCTTACAGCCAGGGGGCGGGATCACAAAAGTTGTTGATGCACGTGATAGGTTGAGCTTGAAGAGGAGTGTCCCTACGACGTCCAATCAGAGCGCAGCGTCTCTAAAGATCACCAAAACCATCCAGcagagGCCTGTGGGAATGACCAGCGGCATCCGGATCAACGTCCCCAGTGCAGCACCTCCgCGTGTGTGTGCTGCTGCTGaagatgaggatgaggatgatgtCAGTGCTGTGATTCCCAGCAAACAGATGAAGATCACTGCTGCCAGCAGCCTGCAGACACGGgCGGGGCCTGTCTCTCTCTCCGCCCCCATCACTAAGGTGGTAAAGAACGACTCGTACACGCCCCCATCTGTCTCGGTGCCGCCCGCTCGCCCTGCACCCCGCCCCCCCACACAGAGCCTGCAGCCCGTCTCCAGGACGACCGTTACTACGCAGCCTGCGGGCAGAGACACCAGCgcccagacacacacacccacacagcctgTCTTCAGTCCTCTGGAAGGCACAAAGATCACCGTGACGAATCTCCACCCGCGGGTGACGGAGGAGGATATTGTGgagctgTTCTGTGTGTGTGGCGCACTCAAGCGGGCACGGCTGGCCAAAGTGGGCGTGGCTGAGGTGGTGTTTGTGCGCAAGGAGGATGCAGTCAGTGCCTACAGGAAGTACAACAACCGCTGTCTGGacgGTCAGCCGATGAAGTGTAATCTGCACATGCAGGGCAGCGTGATCACGTCTGACCAGCCCATCCTACTGAGGTTGAGTGATACTCCTGGTTCTCCGCTGTCCGCACAGAAggcctcctcctcttcctcctcccgctcctccaagtcCTCGTCTGCAGCTGAGGTGGACCCGCAGACCATCTTGAAGGCGCTCTTCAagtcttcctcctcctcctcctcttcctccagcCAGACGGCCAGCAGTGCCAGCGAGACACCGGCCGCTCACGCCACCGCTTTCCGCATCAAGAtctga

Function

symbol description
poldip3 Predicted to enable mRNA binding activity. Predicted to be involved in poly(A)+ mRNA export from nucleus. Predicted to be active in nuclear speck. Orthologous to human POLDIP3 (DNA polymerase delta interacting protein 3).

GO:

id name namespace
GO:0003676 nucleic acid binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG:

id description
ko03019 Messenger RNA biogenesis

ZFIN:

id description
ZDB-GENE-120201-2 Predicted to enable mRNA binding activity. Predicted to be involved in poly(A)+ mRNA export from nucleus. Predicted to be active in nuclear speck. Orthologous to human POLDIP3 (DNA polymerase delta interacting protein 3).

Ensembl:

ensembl_id ENSDARG00000099375

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00049494 False 1470 mRNA 0.62 9 1209006 1218168
TCONS_00049495 False 1393 mRNA 0.62 8 1211242 1218178
TCONS_00049496 True 1407 mRNA 0.62 8 1211280 1218227

Neighbor

gene id symbol gene type direction distance location
XLOC_024947 CU672266.2 coding upstream 17664 1187244 ~ 1191342 (+)
XLOC_024946 ndufa6 coding upstream 22906 1182315 ~ 1186100 (+)
XLOC_024945 triobpb coding upstream 28486 1167026 ~ 1180520 (+)
XLOC_024944 nol12 coding upstream 52973 1150348 ~ 1156033 (+)
XLOC_024943 NA coding upstream 73266 1132938 ~ 1135740 (+)
XLOC_024949 rrp7a coding downstream 1117 1219344 ~ 1222249 (+)
XLOC_024950 wbp2nl coding downstream 5597 1223824 ~ 1228130 (+)
XLOC_024951 NA coding downstream 16797 1235024 ~ 1236717 (+)
XLOC_024952 FP325358.1 coding downstream 42133 1260360 ~ 1268825 (+)
XLOC_024953 sox10 coding downstream 273947 1492174 ~ 1501255 (+)
XLOC_025429 BX649540.1 misc downstream 29030512 30248739 ~ 30249036 (+)
XLOC_024941 NA non-coding upstream 102693 1096804 ~ 1106313 (+)
XLOC_024936 NA non-coding upstream 220951 986881 ~ 988055 (+)
XLOC_024934 NA non-coding upstream 274935 925683 ~ 934071 (+)
XLOC_024954 CR394546.3 non-coding downstream 336075 1554302 ~ 1682090 (+)
XLOC_024955 CR394546.1 non-coding downstream 354623 1572850 ~ 1597978 (+)
XLOC_024956 CR394546.5 non-coding downstream 371337 1589564 ~ 1590504 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G392208 NA non-coding CI01000214 null 93475 ~ 94162 (-)