XLOC_024949 (rrp7a)


Basic Information

Item Value
gene id XLOC_024949
gene name rrp7a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 1219344 ~ 1222249 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00049497
AACTACAGCTCCCAGCGGCCTTTGCGCCTGTTTCGGGTGACGCATGTAAACTAAGATGGCGCCGTCCGCGAATAAAGACGCGTGCGTTATTCCAGGAGGATTTACAGtgCTCTCCCTCAGGTTCAGTGAGGATGACTCTGCCGCTGCTCTTCATcaggtgtgtgttaaagagcaCAGAGTGCGCTCAGAGTCAAACACACACCGACCCGCCGACAGAACACTCTTCGTGCTCAACGTGCCGCCCTACtgcacacagagtgttCTGTCAGGTGTGTTCAGTCGCTTCGGTGTGGTTGAGTCCGTGGATGTGTGTGTGAAGCCCGGAGCAGCGGACAGCAGCGCCAGCGGAGTGTGTGAACTCTTCAGAGCCCCAGAACCAcagtgtTTCAGAGTAGCGTATGTGGTGTTCCGGAGCGCAGCGAGTGTGAACGCAGCTAAACGTCACCCACTGCACGACTCGCTCATCACCTCCACAGCGGAGAGACCCGTCAGAACCGGCCTGCgcaagtggATCCAGCAGTACTCCGGGTCTCTGGTCAAGGCTTCGTCTCTTCAGGCTGCAGTGGATCAGTTCATGGAGGAGTTCGACACGCGCAAACAGCagGAGGCGGAGCGTCTGCAGCAGGAGGCGGAGCAGCAGCAGGAGGATGAGGAGGGCTGGGTGAAGGTGACGAAGGGCAGCCGCGGGGCTAAGGCCCGCCCACACACAGAGACAGCCAATCAGAGGACACTGCagaaggaggagaagaagaagCAGCGCAAGGAGCTCCTCAACTTCTACTCGTGGCAGCACCGCAACACACAGAGAGAgcacATCGCTGAGCTGAGGAAGAAGTTTGAGGAGGATAAGCAGAGGATCGCTGTACTCAGAGCACAGAGGAAGTTCAAGCCCTACTGACTCACTAACCCACAATCCCCTTCACCAGCGCTCCATCTACCCACAATCCCCCTGTCCTGTAGTGTTCACATGAGCAGTGATCAGAAATAAAGTCTGCAGTGAGCGGa

Function

symbol description
rrp7a Predicted to enable RNA binding activity. Predicted to be involved in rRNA processing and ribosomal small subunit assembly. Predicted to be part of CURI complex and UTP-C complex. Orthologous to human RRP7A (ribosomal RNA processing 7 homolog A).

GO:

id name namespace
GO:0000028 ribosomal small subunit assembly biological_process
GO:0006364 rRNA processing biological_process
GO:0034456 UTP-C complex cellular_component
GO:0032545 CURI complex cellular_component
GO:0003676 nucleic acid binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050417-38 Predicted to enable RNA binding activity. Predicted to be involved in rRNA processing and ribosomal small subunit assembly. Predicted to be part of CURI complex and UTP-C complex. Orthologous to human RRP7A (ribosomal RNA processing 7 homolog A).

Ensembl:

ensembl_id ENSDARG00000098934

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00049497 True 1005 mRNA 0.57 7 1219344 1222249

Neighbor

gene id symbol gene type direction distance location
XLOC_024948 poldip3 coding upstream 1117 1209006 ~ 1218227 (+)
XLOC_024947 CU672266.2 coding upstream 28002 1187244 ~ 1191342 (+)
XLOC_024946 ndufa6 coding upstream 33244 1182315 ~ 1186100 (+)
XLOC_024945 triobpb coding upstream 38824 1167026 ~ 1180520 (+)
XLOC_024944 nol12 coding upstream 63311 1150348 ~ 1156033 (+)
XLOC_024950 wbp2nl coding downstream 1575 1223824 ~ 1228130 (+)
XLOC_024951 NA coding downstream 12775 1235024 ~ 1236717 (+)
XLOC_024952 FP325358.1 coding downstream 38111 1260360 ~ 1268825 (+)
XLOC_024953 sox10 coding downstream 269925 1492174 ~ 1501255 (+)
XLOC_024954 CR394546.3 coding downstream 332053 1554302 ~ 1682090 (+)
XLOC_025429 BX649540.1 misc downstream 29026490 30248739 ~ 30249036 (+)
XLOC_024943 NA non-coding upstream 83604 1132938 ~ 1135740 (+)
XLOC_024941 NA non-coding upstream 113031 1096804 ~ 1106313 (+)
XLOC_024936 NA non-coding upstream 231289 986881 ~ 988055 (+)
XLOC_024934 NA non-coding upstream 285273 925683 ~ 934071 (+)
XLOC_024955 CR394546.1 non-coding downstream 350601 1572850 ~ 1597978 (+)
XLOC_024956 CR394546.5 non-coding downstream 367315 1589564 ~ 1590504 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000214_00099655_00100584 NA coding CI01000214 null 99655 ~ 100685 (+)