RNA id: TCONS_00049496


Basic Information

Item Value
RNA id TCONS_00049496
length 1407
RNA type mRNA
GC content 0.62
exon number 8
gene id XLOC_024948
representative True

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 1209006 ~ 1218227 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGGCCTTTGATGCCCGGCAGAAGATTGGCAGTGGTGATGTCAGACAGAGGCTGGGAGTGGGTGGAGCCAGCGGGGGGAAACGCCTCCAGATTTCGGCTAGCGGAGCTGCAGTTCAGACTCTGTCGCGGCCGTCAGTGTTTCCGGTGAAGGACGCCAGGGAGAAGCTGGGCCAGAAAGACGCTCGGCTGCGGCTGCGGGGCCGAGGAGGTGGGACCAGTGCTGTGCAGAGCCGAGGGGGAGGGGCCAGTGCGATGCAGGACGCCCGGCTGATGATCAACCTGCgcaaacagcagcagcagcagccgtCCGCCAGCGGCCCCGCCCCAGCCTCCGCCCGGCCCAGCGGCCCCGGGGTCCCACACGTACACATACACAACACCAGCcctcgcgcacacacactcaccaccAGAGTGGGTGTGGCCTTACAGCCAGGGGGCGGGATCACAAAAGTTGTTGATGCACGTGATAGGTTGAGCTTGAAGAGGAGTGTCCCTACGACGTCCAATCAGAGCGCAGCGTCTCTAAAGATCACCAAAACCATCCAGcagagGCCTGTGGGAATGACCAGCGGCATCCGGATCAACGTCCCCAGTGCAGCACCTCCgCGTGTGTGTGCTGCTGCTGaagatgaggatgaggatgatgtCAGTGCTGTGATTCCCAGCAAACAGATGAAGATCACTGCTGCCAGCAGCCTGCAGACACGGgCGGGGCCTGTCTCTCTCTCCGCCCCCATCACTAAGGTGGTAAAGAACGACTCGTACACGCCCCCATCTGTCTCGGTGCCGCCCGCTCGCCCTGCACCCCGCCCCCCCACACAGAGCCTGCAGCCCGTCTCCAGGACGACCGTTACTACGCAGCCTGCGGGCAGAGACACCAGCgcccagacacacacacccacacagcctgTCTTCAGTCCTCTGGAAGGCACAAAGATCACCGTGACGAATCTCCACCCGCGGGTGACGGAGGAGGATATTGTGgagctgTTCTGTGTGTGTGGCGCACTCAAGCGGGCACGGCTGGCCAAAGTGGGCGTGGCTGAGGTGGTGTTTGTGCGCAAGGAGGATGCAGTCAGTGCCTACAGGAAGTACAACAACCGCTGTCTGGacgGTCAGCCGATGAAGTGTAATCTGCACATGCAGGGCAGCGTGATCACGTCTGACCAGCCCATCCTACTGAGGTTGAGTGATACTCCTGGTTCTCCGCTGTCCGCACAGAAggcctcctcctcttcctcctcccgctcctccaagtcCTCGTCTGCAGCTGAGGTGGACCCGCAGACCATCTTGAAGGCGCTCTTCAagtcttcctcctcctcctcctcttcctccagcCAGACGGCCAGCAGTGCCAGCGAGACACCGGCCGCTCACGCCACCGCTTTCCGCATCAAGAtctga

Function

GO:

id name namespace
GO:0003676 nucleic acid binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG:

id description
ko03019 Messenger RNA biogenesis

ZFIN:

id description
ZDB-GENE-120201-2 Predicted to enable mRNA binding activity. Predicted to be involved in poly(A)+ mRNA export from nucleus. Predicted to be active in nuclear speck. Orthologous to human POLDIP3 (DNA polymerase delta interacting protein 3).

Ensembl:

ensembl_id ENSDART00000165769

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00049493 lncRNA upstream 19938 1187244 ~ 1191342 (+) True XLOC_024947
TCONS_00049488 lncRNA upstream 57231 1150386 ~ 1154049 (+) True XLOC_024944
TCONS_00052525 lncRNA upstream 75540 1132938 ~ 1135740 (+) False XLOC_024943
TCONS_00052524 lncRNA upstream 75540 1132938 ~ 1135740 (+) True XLOC_024943
TCONS_00052523 lncRNA upstream 104967 1096804 ~ 1106313 (+) False XLOC_024941
TCONS_00052526 lncRNA downstream 16797 1235024 ~ 1236717 (+) False XLOC_024951
TCONS_00052527 lncRNA downstream 17178 1235405 ~ 1236717 (+) True XLOC_024951
TCONS_00049499 lncRNA downstream 42133 1260360 ~ 1268825 (+) True XLOC_024952
TCONS_00052303 lncRNA downstream 336672 1554899 ~ 1563730 (+) False XLOC_024954
TCONS_00052528 lncRNA downstream 354623 1572850 ~ 1577061 (+) False XLOC_024955
TCONS_00049492 mRNA upstream 25180 1182315 ~ 1186100 (+) True XLOC_024946
TCONS_00049490 mRNA upstream 30760 1167031 ~ 1180520 (+) False XLOC_024945
TCONS_00049489 mRNA upstream 30810 1167026 ~ 1180470 (+) False XLOC_024945
TCONS_00049491 mRNA upstream 31131 1179601 ~ 1180149 (+) True XLOC_024945
TCONS_00049487 mRNA upstream 55247 1150348 ~ 1156033 (+) False XLOC_024944
TCONS_00049497 mRNA downstream 1117 1219344 ~ 1222249 (+) True XLOC_024949
TCONS_00049498 mRNA downstream 5597 1223824 ~ 1228130 (+) True XLOC_024950
TCONS_00049500 mRNA downstream 273947 1492174 ~ 1501255 (+) True XLOC_024953
TCONS_00049508 mRNA downstream 419131 1637358 ~ 1639983 (+) True XLOC_024959
TCONS_00049509 mRNA downstream 470993 1689220 ~ 1704409 (+) False XLOC_024960
TCONS_00049471 other upstream 356650 842733 ~ 854630 (+) True XLOC_024931
TCONS_00049457 other upstream 788542 420342 ~ 422738 (+) True XLOC_024918
TCONS_00049501 other downstream 336075 1554302 ~ 1559477 (+) False XLOC_024954
TCONS_00049502 other downstream 338626 1556853 ~ 1682090 (+) True XLOC_024954
TCONS_00049503 other downstream 354623 1572850 ~ 1576295 (+) False XLOC_024955
TCONS_00049504 other downstream 358526 1576753 ~ 1586425 (+) False XLOC_024955
TCONS_00049505 other downstream 367827 1586054 ~ 1588601 (+) True XLOC_024955

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU449091 True 518 lncRNA 0.61 3 CI01000214 93475 ~ 94162 (-)
bowfin (Amia calva) TU93349 False 1492 TUCP 0.54 5 CM030128.1 40401783 ~ 40405328 (-)