RNA id: TCONS_00049505


Basic Information

Item Value
RNA id TCONS_00049505
length 2444
RNA type processed_transcript
GC content 0.45
exon number 2
gene id XLOC_024955
representative True

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 1572850 ~ 1597978 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTCTAGTTTTACACATGTTGCTGTTATTTATTTCTAGATCTGAATGTGGTCCTGCTGGGAAAAAGAGGAGCAGGGAAAAGTGCATCAGGAAACACAATCCTGGGAAGACAAGTTTTCATCTCCAAGAAAAGTGCCAGACCAGTCACACGAGACGTCAATGTGGAGTCTGGATCATTCTGTGAACTACCAGTCACTGTTTACGACACTCCAGGATTGTTTGACACAAAGCTGAGGGATGAAGAGATTCAGCAGATGATCAGTGAGAAGGTCCTCCAGAAATGTTCATcaggtctgtgtgtgtttctgctggtcATCAGAGCTGACAGATTCACTGAAGAAGAGAGAAAAACTGTGGAGAAGATTGAGAAGATCCTGGGAGAAAAACACCAGAAAAACACCTGGATTCTGTTCACTGGAGGAGACGAACTGGAGGAAGAAAACACGACAATACAGGAGTTCATAGAGGAGACTGAAGAACTGAAGACACTCGTGCAGAAATATGAGCACCGATACCATCTGTTCAACAACAAGAGGAAGATGAAAAGGACGAGTGTACAAGTAAAGGCGCTCTTCACAAAAATACTGAAGAATTACTCTGACACAGCGGcaggaGCAGAGAATCTATTGAGAAAAATACCAGCAAATATTGAGCCAGTCCCTCGTGTCTCCAGTCCTCCCTCCAGACGGATTGTTCTTGTGGGTAAATCTGGTGTTGGTAAAAGTGCAGCTGGAAACACAATCCTGGGACAGAAAGAGTTCAGATCTGTGAGGAGGATGAGTTCAGTAACCTGTAAATCTTCAGCAGCTCAGACCACAGTTTCAGGCAGATCTGTATCTGTAGTCGACACTCCTCCATTATTCGACACACAGATGAATCCTGAAGAGTTAATGATGGAGATCGCCAGAAGTGTGTATATCTCCAGTCCTGGACCTCACGCTTTCCTCATTGTGTTTCCTGTCAACATGAGATTCACTGAACGGGAGCTGCAGATTCTTCAGAAGATTGAGCTGATGTTTGGTGAAGAAGTGTTGAAATACTCCATCATTCTCTTCACTCATGGAGATCTGCTGGATGGAGAGCCTGTAGAGAAGCTGATAGAGGAGAACAGTGGATTAAGATCTGTAGTCCAGCAGTGTGGAGGCAGATATCATGTGTTCAACAACAGAGATGAGGAGAACAGAGAGCAGGTGGAGGATCTACTGCAGAAGACTGAGTTAATGATACAGCAGAATGGAGGAGGACACTACACTAACCAGATGTTTGAAGACGCTCAGAGATTCAGACGAGAGGAAGAAGAGCAGAGACAGAGAGAAGAAGAGGAGAGAAAACTACAAGAGGAGAAACAAATACAAGAGGAGATTAAAAGAGTGAGAAAGGAGACAGAGGAGAGAGTCAGAGCAGAAATGGAAGCTAAAAATCTTAAAGCAGAGAGACCGAGTGAGGAAGAACAGAGAAGACGAGAGAAACAAAGACAAAAGGAgattgagagagagaaaaaaaatactaaggaGAGGGTTAGAAAAGAAATGCAAGCTGTAAATGATATAGAGGAGAGAATCAAGGGTGAAGATCGAGTGAGAAAACAAAGCCAAAACTGTGTGTGTAGTTGATCGTCTTTTGATTGTTTGACACAGTGATGGAGTGAATAACAGAGAGCAGGTGACTGAGGAGGACTCGAGGCCTCAGTTTCATCTAACATCAattaaaacacaacacacattaaTAAGTTGAACTCAGACACTGCTCTGTCCTATCACAGTATATTTGTTGTtttcatatgcaccagacactctCTTATCAATACTTCATCTTTCTGTAAAACAGTGTGATTAACTAATCCTGCTGCTCTCTGCTGATCTGAAGCGCTGCTTTATCTTCATTTGTaaatcccccacagtccaaacacctgcGCTTTAGGGGATCTGATGTACTAAACTGGCtcaagtgaatgagtgtgtggaggtgacgctgtggcgcagtaggaagtgctgtcgcctcacagcaagagggttgctggttcgagcctcagctgggtcatttggtgtttctgtgtggagtttgcatgttctccccatgttggcgtgggtttcctccgggtgctccggtttcccccacagtccaaacacatgtgctataggggaactgggtaggctaaattgtccatggtgtatgtgtgtgaatgtgtgtgtgtggatgtttcccagaaaaaaagtgctggataagttggtggttcatttcactgtggcgacccgggattaataaaggcactaaggtgaaaagaaaatgcatgaatgagagtgtgtgtgtgtgtgtgtgcgcatgtggatgtttcccagtactgggatccagctggaagggcatctgctgtattaaatttatgctggataagttggtggttcattccgctggggtgacccctgattaataaagagactaagccgaa

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000124285

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00052528 lncRNA upstream 8993 1572850 ~ 1577061 (+) False XLOC_024955
TCONS_00052303 lncRNA upstream 22324 1554899 ~ 1563730 (+) False XLOC_024954
TCONS_00049499 lncRNA upstream 317229 1260360 ~ 1268825 (+) True XLOC_024952
TCONS_00052526 lncRNA upstream 349337 1235024 ~ 1236717 (+) False XLOC_024951
TCONS_00052527 lncRNA upstream 349337 1235405 ~ 1236717 (+) True XLOC_024951
TCONS_00049507 lncRNA downstream 963 1589564 ~ 1590504 (+) False XLOC_024956
TCONS_00049506 lncRNA downstream 963 1589564 ~ 1590504 (+) True XLOC_024956
TCONS_00052304 lncRNA downstream 41976 1630577 ~ 1631804 (+) True XLOC_024957
TCONS_00052305 lncRNA downstream 43211 1631812 ~ 1633218 (+) True XLOC_024958
TCONS_00052530 lncRNA downstream 222790 1811391 ~ 1812263 (+) True XLOC_024965
TCONS_00049500 mRNA upstream 84799 1492174 ~ 1501255 (+) True XLOC_024953
TCONS_00049498 mRNA upstream 357924 1223824 ~ 1228130 (+) True XLOC_024950
TCONS_00049497 mRNA upstream 363805 1219344 ~ 1222249 (+) True XLOC_024949
TCONS_00049496 mRNA upstream 367827 1211280 ~ 1218227 (+) True XLOC_024948
TCONS_00049495 mRNA upstream 367876 1211242 ~ 1218178 (+) False XLOC_024948
TCONS_00049508 mRNA downstream 48757 1637358 ~ 1639983 (+) True XLOC_024959
TCONS_00049509 mRNA downstream 100619 1689220 ~ 1704409 (+) False XLOC_024960
TCONS_00049510 mRNA downstream 109829 1698430 ~ 1714615 (+) True XLOC_024960
TCONS_00049511 mRNA downstream 136340 1724941 ~ 1729813 (+) True XLOC_024961
TCONS_00049512 mRNA downstream 146613 1735214 ~ 1737590 (+) True XLOC_024962
TCONS_00049503 other upstream 9759 1572850 ~ 1576295 (+) False XLOC_024955
TCONS_00049501 other upstream 26577 1554302 ~ 1559477 (+) False XLOC_024954
TCONS_00049471 other upstream 731424 842733 ~ 854630 (+) True XLOC_024931
TCONS_00049457 other upstream 1163316 420342 ~ 422738 (+) True XLOC_024918
TCONS_00049514 other downstream 194214 1782815 ~ 1804482 (+) False XLOC_024964
TCONS_00049515 other downstream 194591 1783192 ~ 1804482 (+) False XLOC_024964
TCONS_00049516 other downstream 199594 1788195 ~ 1803345 (+) True XLOC_024964
TCONS_00049552 other downstream 2680753 4269354 ~ 4270546 (+) True XLOC_025004
TCONS_00049569 other downstream 4449602 6038203 ~ 6038338 (+) True XLOC_025028

Expression Profile

//