RNA id: TCONS_00049511


Basic Information

Item Value
RNA id TCONS_00049511
length 1663
RNA type mRNA
GC content 0.43
exon number 3
gene id XLOC_024961
representative True

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 1724941 ~ 1729813 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CCGCCCACACACACGTTTCTTCCTGGTGGTTTTACGAAGGAAAAGAGAACCTTCAGCATGCAGGAGGATGAAGAGACACACatcaggaggaggaggaagatgatgAACTGAAGAAAGAGAAGCAGATCAACATGAGCAGCATAATAACATGAAGATCAGCAACATCAGAAATGAACAGAGATGATGTTCAGCTGATGAAGAGCAGAAGATCAACATGAGCAGCAGAGAGAGCAGAGGTCAGAGTCCATCTGATAAAACATCTTTCCTAAAGTTAAAAACTAAATGAACAGCTGATGACCAGCCTTATGGGTGTTTTAATAAAGATGTatgaattataaattattatcttTACTAATATGATCTGCCCTGACATATGTTCACTTGAATGTTTTATAGCCGTTGAACACAGTCCTGCTCTCAAAAGAAGTCGAAGCAAAGAACTAGAGCCTCCTGACTTGAGTACTGCGGCTCCTCTGAGGATTCTTCTTCTGGGTAAAAGCGTGTCTGAAAACAGCCGTGTGGGAAACTTGATCTTGGGTCGATCAGCGTTTGACAGTGAAGCTCCTCCAGATGTTGTGGAGAGAGTCGGAGGAAGACTGAAGCACAGACACGTGACGCTCATCAACAGTCCTCAGCTGCTCCACATAAACATCTCAGATGATCAGATCACACAGACGGTCAGAGAGTGCGTGAGTCTGTCTGATCCAGGACCTCATGTGGTGCTTCTGCTCCTCCAACATCAGCAGTGTTCAGCAGAAGATCAAGAGcgtgtggagaagctgcagaacTCTTTCTCTGAGCGTCTTCTTCAACACACCCTGGTGCTCAGCACACAAGAGCCCACTGAACCCAATCAGATCCTGCAGAAGATCATCCAGAAGTGCTCCAACAGACACGTCAGTCTTCAGACAAGCAGCTCTGCTGATCATCTTCTGCAGGCCTTTGAGGACATCGAGCGGAGCAATGAGGGACGACACCTGATTACACCAGCTCCATCTGGAGAATCACTGAGAGAACAGTTTAATGAGAGACTGAGAGAAGTGAGGGAGaggatggagagagagaaagaagatcTTCAGTCTAAACATGAAGCGAAACAAAACAAGATGAAGATCCAGATAGAGGAACTGAATAGAGAAAGAGAAGAACTGAGGAAGAAACTAGAAGAAAAAGAGAGAATGATAATGATGATGCAACAGAATCCAGAGATTCTTAATATACAGCATAAGAAAAGAGAAGGGGAGTTCAGAAAGATGGAAGAGGAATGTGTAAAACTGATTAAAGAAGTGCAAAAGCAGAATAAACAGCTTAAATGGATACAACTGAAGCAAATACAAAAACCAGAGCAAAAACTGAAAAGAGAAGAACAGATATCTGAACTTTACAGGATAGACCAAAGTCCAGATAGCAAACTCATAACTGGTAAGAAATGATTTTATActatttaaaatgacttaaagATTTTACATCAGGGGTGTCGAAACACGGTCgtggagagtttagcttcaaccctaatcaagcacacctgaaccagctaatcaagctcttaccagatatactagaaacttcctggcaggtgtgttgaggcaagttggagctaaactcagcagaactcaaccggccctccaggaccgagcttagacagccattttaaatgatttta

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000193402

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00052305 lncRNA upstream 91723 1631812 ~ 1633218 (+) True XLOC_024958
TCONS_00052304 lncRNA upstream 93137 1630577 ~ 1631804 (+) True XLOC_024957
TCONS_00052529 lncRNA upstream 126963 1576753 ~ 1597978 (+) False XLOC_024955
TCONS_00052530 lncRNA downstream 81578 1811391 ~ 1812263 (+) True XLOC_024965
TCONS_00052531 lncRNA downstream 412816 2142629 ~ 2143945 (+) False XLOC_024967
TCONS_00052532 lncRNA downstream 413093 2142906 ~ 2143945 (+) True XLOC_024967
TCONS_00052533 lncRNA downstream 743607 2473420 ~ 2476560 (+) False XLOC_024968
TCONS_00052534 lncRNA downstream 743614 2473427 ~ 3166194 (+) False XLOC_024968
TCONS_00049510 mRNA upstream 10326 1698430 ~ 1714615 (+) True XLOC_024960
TCONS_00049509 mRNA upstream 20532 1689220 ~ 1704409 (+) False XLOC_024960
TCONS_00049508 mRNA upstream 84958 1637358 ~ 1639983 (+) True XLOC_024959
TCONS_00049500 mRNA upstream 223686 1492174 ~ 1501255 (+) True XLOC_024953
TCONS_00049498 mRNA upstream 496811 1223824 ~ 1228130 (+) True XLOC_024950
TCONS_00049512 mRNA downstream 5401 1735214 ~ 1737590 (+) True XLOC_024962
TCONS_00049513 mRNA downstream 19980 1749793 ~ 1761980 (+) True XLOC_024963
TCONS_00049517 mRNA downstream 212406 1942219 ~ 1943632 (+) True XLOC_024966
TCONS_00049518 mRNA downstream 940000 2669813 ~ 2673643 (+) True XLOC_024971
TCONS_00049519 mRNA downstream 989430 2719243 ~ 2894449 (+) False XLOC_024972
TCONS_00049502 other upstream 42851 1556853 ~ 1682090 (+) True XLOC_024954
TCONS_00049505 other upstream 136340 1586054 ~ 1588601 (+) True XLOC_024955
TCONS_00049504 other upstream 138516 1576753 ~ 1586425 (+) False XLOC_024955
TCONS_00049503 other upstream 148646 1572850 ~ 1576295 (+) False XLOC_024955
TCONS_00049501 other upstream 165464 1554302 ~ 1559477 (+) False XLOC_024954
TCONS_00049514 other downstream 53002 1782815 ~ 1804482 (+) False XLOC_024964
TCONS_00049515 other downstream 53379 1783192 ~ 1804482 (+) False XLOC_024964
TCONS_00049516 other downstream 58382 1788195 ~ 1803345 (+) True XLOC_024964
TCONS_00049552 other downstream 2539541 4269354 ~ 4270546 (+) True XLOC_025004
TCONS_00049569 other downstream 4308390 6038203 ~ 6038338 (+) True XLOC_025028

Expression Profile

//