RNA id: TCONS_00049515


Basic Information

Item Value
RNA id TCONS_00049515
length 3675
RNA type processed_transcript
GC content 0.42
exon number 5
gene id XLOC_024964
representative False

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 1782815 ~ 1804482 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ACACtgaaacatcattcattcattcattcattctttatttcatgttccttcggcttagtccactatttatcaggggtgaggggtcgccacagtggaatgaaccgcccactgaAACATTTCTCTTCTTATTAAATACAGGAGGAAACCaacttatattttaataattttttattaaacatattttgaatACAACAGATCAGTATAATTAATGTAGTTAAATCTGTGTGATCTCTGACAGGAGGATGAAGAGACACACatcaggaggaggaggaagatgatgAACTGAAGAAAGAGAAGCAGATCAACATGAGCAGCATAATAACATGAAGATCAGCAACATCAGAAATGAACAGAGATGATGATCAGCTGATGAAGACTGAAGATCAACATGAGCAGCAGAGAGAGCAGAGCCGTTGAACACAGTCCTGCTCTCAAAAGAAGTCGAAGCAAAGAACTAGAGCCTCCTGACTTGAGCACTGATTCTCCTCTGAGGATTCTTCTCCTGGGTAAAAGCGTGTCTGAGAACAGCCGTGTGGGAAACTTGATCTTGGGCAGATCAGCGTTTGACAGTGAAGCTCCTCCAGATGTTGTGGAGAGAGTCGGAGGAAGACTGAAGCACAGACACGTGACGCTCATCAACAGTCCTCAACTGCTCCACACACACATCTCAGATGATCAGATCACACAGACGGTCAGAGAGTGCGTGAGTCTGTCTGATCCAGGACCTCATGTGGTGCTTCTGCTCCTCCAACATCAGCAGTGTTCAGCAGAAGATCAAGAGcgtgtggagaagctgcaggactCTTTCTCTGAGCGCCTTCTTCAACACACCCTGGTGCTCAGCACACAAGAGCCCACTGAACCCAATCAGATCCTGCAGAAGATCATCCAGAAGTGCTCCAACAGACACTTCAGTCTTCAGACAAGCAGCTCTGCTGATCATCTTCTGCAGGCCTTTGAGGACATCGAGCGGAGCAATGAGGGACGACACCTGATTACACCAGCTCCATCTGGAGACTCACTGAGAGAACAGTTTAATGAGAGACTGAGAGAAGAGAGGGAGaggatggagagagagaaagaagatcTTCAGTCTAAACATGAAGCGGAACAAAACAAGATGAAGATCCAGATAGAGGAACTGAATAGAGAAAGAGAAGAACTGATGAAGAAGCTCAcgcaagagaaagagagaacaaAGAAGTTGACGATGGAGAAACAACAAAACCAGGAGAAAGAGAGAATGAAGATGATGGAGGAACAACAGATTCAGGAGAAAGAGACCATGAAGATGATTATGGAAGCACATCAGAATCAGCATAAAGGGAGAATAAAGATGATGGAGGAACAACACATTCAGGAGAAAGAGCGCATGAAGCTGATGATGGAAGCACAACAGAATCAGTTTAAAGGGagaatgaagatgatgatggaggAGGAGGAACAACAGAATCAGAAGAAAAAGAGAATGAAGATGATGGAGGAACAACACATTCAGGACAAAGAGACCATGAAGATGATGGAAGCACATAATCTGTTTAAAGAGAGAATAAAGATGATTAAGGAGGAGGAACGACAGAATCAGAAGAAAAAGAGAATGAAGATGATGGAGGAACAACAGATTCAGGAGAAAGAGACCATGAAGATGGAGAAACGACAGAATCCGGTGAAAGTGAGAATGAGAAGAGAAGAAGAGTTCATACAGAGAAAAGAGGGAAACGAAATGCTTGAAATAATGAAATTGGAGGGAATTAAGAAACCGAAACCAGAGGAAAGActgaaaagaagagaagaaaaacAGTTATCTGAACTTTACAGGAGACACGAAAGTCCAGTTACTGGATTCACACCAGtttgTATGTTATCCTCGCTGGGAGAAAGAGGTGCTGGGAAAAGTTCATCAGAAGAAACATTCTTGCGTGGACCAGCATTTGCCTCAAAGAAAAGCTCTACATTCTCACAAGATGCCGCTGTGGAGGCTGGAGATTGGTTTCCAGTCCCTGTTTTTAACACACCAGGATTATCTGGTTCATATATGACAGGAGGGGGTCAGCAGATGAGGAATGAAAGCTTTTCACGTCTTCAAACAATGGCAAGTAAAGCAGAGCGAAAAAAGCCAGAACACACTCTAGTGTCCAGTCTCTCCTCCAGACGGATTGTTCTTCTGGGTAAATCTGGTGTTGGTAAAAGTACAGTTGGAAACACAATCCTGGGACAGAAAAAGTTCTCATGTCAGATAAGGAGCCATTCAGTAACGCGTGTTTGTTCAGCAGCTCAGGCCACAGTTTCAGGCAGATCTGTGTCTGTAGTCGACACTCCGGGATTCTTTCACACACATATGAACAACAATGAGTTAATGATGGAGATCCGCAGAAGTGTGTATATCTCCAGTCCTGGACCTCACGCTTTCCTCATTGTGCTGCGTGCAAATGACAGATTCACTGAACTGGAGCAACAGACTCTTCAGAAGATTGAGCTGATGTTTGGTAAGGATGTGTTGAATTACTGCATCATTCTCTTCACTCATGGAGATCTGCTGGATGGAGAAGTGTCCATAGAGAAGCTGATAGAGGAGAACAGTAGATTAAGATCTGTAGTCCAGCAGTGTGGAGGCAGATATCATGTGTTCAACAACAGAGATGAGGAGAACAGAGAGCAGGTGGAGGATCTACTGCAGAAGATTGACTCAATGATACAGCAGAATGGAGGAGGACACTACACTAACCAGATGTATGAAGACGCTCAGAGATTCAGACAAGAGCAGGAAGAGAAAAAGCTAGAGAGCAACTTGAAAGATTGGCACAGGAGGGAGtggacaaaatgaaaaaaaaaaaaaaacaaacgaacaaaaacaataaacagtttTCACACATTTCTTAATCTCTCAAATGAGTAACTGGAAATGTTGCTCGGTTCTCACACTGTTCATGGCATTCCCATCCtgttgtatttataaaaaaacgACTATCTTCACAATTTTTAAATCTATGTTGCATAAATGTACGTACATGTATGACAGTTCTTACATCATTGAAATCTAAACATGAACTTGTATTTTAAACTTGTGATCTGCTTATATTGCTGTATCTGAGATGCATGTGGGATCAGGATCAGCTGCTGCTTTCACCTTTTTTCTCGACGAGGCTGACTCTAGCTCTTTAAATATCAGCTTCATATTTGATAAACTATCCATTccacattaaaatgttatttgattGTAACTCCTCACTGCTCAGTTTTATTGGCTGTTTTTCTTAAAGGAACCACTGGACTAATTCCTACAGCTTGTGTCATAACTGTTTTATTTCTTAATAGACAAGGTCAgtcagttggcgattctgtgtggagtttgcatgttctccctacgttcgcgtcaggcacgtgcacacatagggctaaacctgtgcagtgcacatgccctttttagtcttggatagaaagtgcccttacaaaatgatcaaaagtgcccccgcgacattccattttttacaacacaacaattcccaaagtgctgaacacaatcaatactaaataaagtaaaacctacatcacatacataacaattaaaacataaggcaaacccctcaacattaaaaaggctcaaatgctAAAGAACAAGGATGCAGTTTCAGaagctttttaaaaatctggatttgcttgtttgttaaatttcag

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000184570

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00052305 lncRNA upstream 149974 1631812 ~ 1633218 (+) True XLOC_024958
TCONS_00052304 lncRNA upstream 151388 1630577 ~ 1631804 (+) True XLOC_024957
TCONS_00052529 lncRNA upstream 185214 1576753 ~ 1597978 (+) False XLOC_024955
TCONS_00052530 lncRNA downstream 6909 1811391 ~ 1812263 (+) True XLOC_024965
TCONS_00052531 lncRNA downstream 338147 2142629 ~ 2143945 (+) False XLOC_024967
TCONS_00052532 lncRNA downstream 338424 2142906 ~ 2143945 (+) True XLOC_024967
TCONS_00052533 lncRNA downstream 668938 2473420 ~ 2476560 (+) False XLOC_024968
TCONS_00052534 lncRNA downstream 668945 2473427 ~ 3166194 (+) False XLOC_024968
TCONS_00049513 mRNA upstream 21212 1749793 ~ 1761980 (+) True XLOC_024963
TCONS_00049512 mRNA upstream 45602 1735214 ~ 1737590 (+) True XLOC_024962
TCONS_00049511 mRNA upstream 53379 1724941 ~ 1729813 (+) True XLOC_024961
TCONS_00049510 mRNA upstream 68577 1698430 ~ 1714615 (+) True XLOC_024960
TCONS_00049509 mRNA upstream 78783 1689220 ~ 1704409 (+) False XLOC_024960
TCONS_00049517 mRNA downstream 137737 1942219 ~ 1943632 (+) True XLOC_024966
TCONS_00049518 mRNA downstream 865331 2669813 ~ 2673643 (+) True XLOC_024971
TCONS_00049519 mRNA downstream 914761 2719243 ~ 2894449 (+) False XLOC_024972
TCONS_00049520 mRNA downstream 950403 2754885 ~ 2757607 (+) True XLOC_024973
TCONS_00049521 mRNA downstream 1081741 2886223 ~ 2894449 (+) True XLOC_024972
TCONS_00049502 other upstream 101102 1556853 ~ 1682090 (+) True XLOC_024954
TCONS_00049505 other upstream 194591 1586054 ~ 1588601 (+) True XLOC_024955
TCONS_00049504 other upstream 196767 1576753 ~ 1586425 (+) False XLOC_024955
TCONS_00049503 other upstream 206897 1572850 ~ 1576295 (+) False XLOC_024955
TCONS_00049501 other upstream 223715 1554302 ~ 1559477 (+) False XLOC_024954
TCONS_00049552 other downstream 2464872 4269354 ~ 4270546 (+) True XLOC_025004
TCONS_00049569 other downstream 4233721 6038203 ~ 6038338 (+) True XLOC_025028
TCONS_00049575 other downstream 4556399 6360881 ~ 6370802 (+) True XLOC_025032
TCONS_00049594 other downstream 6585073 8389555 ~ 8389671 (+) True XLOC_025061
TCONS_00049598 other downstream 7224012 9028494 ~ 9028642 (+) True XLOC_025069

Expression Profile

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