RNA id: TCONS_00049521



Basic Information


Item Value
RNA id TCONS_00049521
length 904
RNA type mRNA
GC content 0.38
exon number 2
gene id XLOC_024972
representative True

Chromosome Information


Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 2719243 ~ 2894449 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence


CTTTGATGCAAAAAAACCCAAATAATCataatgatgacaataattataatgatagtaAAAATGAGAAGAACAATAATGATTTTAAGCTCCGCCTTTCAACACTCTTTTTAGGTTGATAATGAAAGcagacattttaaaacaacttctTCAGGACAACCACCAACACGAGACTACAGTTTGGCTGTTTATGTACTTTGTTTGACAAtgAGTGATCTGAGGATTGTTCTTCTGGGGAAAAGCATGTCAGATAACAGACATGTGGCAAACTTCATTTTAGAGAGAGATGGGCCTGAGAGTAAAACATCAGTTACTATGAAGCTCCAGCAGTGCAGTCAGAGAATTGAAGGAAGACTGAATCACAGATATGTGATGCTCATCAACAGTCCTCAGCTGCTTCAGCCTAATCTGTCTCTTCATCAGATCACACAGACAGTCAGAGAGTGTGTGAGTCTGTCTGATCCAGGACCTCATGTCTTCATCATCGTACTGCATCTTAAAGACTTCACCGATGAGGACAGATACAGAGTAAAAGGTGTCCTGAAGGAGTTCAGTGAAGAGGCCATCAAACGCACCATAGTGCTCACGACTGATGACAAGACACATGGATCAGTGTTTAGTTATTTCTCCAAAAATACTGCAGTGAATCTGTTAATAGCGGAGTGTGGAGGAGGACATCTGcaactgaatgaaaaaaaaacaggatggCGTTCTGACATACTGAAAAGGGTTGAGGAGATTCTGAAGGGAAAAAAGGAAACATATCTCACTTGTACAATATATGAAGATGTCAAACGAACATCAGAGGATAAAGAGGAGAAGAAATCTGAGGAAGAAAATTATGAAAGTTCCTATGAAAAAGATCTCAAAGAGATAAGTCATGaaggtatttttatttattttatca

Function


GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000191618

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TCONS_00052533 lncRNA upstream 409663 2473420 ~ 2476560 (+) False XLOC_024968
TCONS_00052531 lncRNA upstream 742278 2142629 ~ 2143945 (+) False XLOC_024967
TCONS_00052532 lncRNA upstream 742278 2142906 ~ 2143945 (+) True XLOC_024967
TCONS_00052530 lncRNA upstream 1073960 1811391 ~ 1812263 (+) True XLOC_024965
TCONS_00052305 lncRNA upstream 1253005 1631812 ~ 1633218 (+) True XLOC_024958
TCONS_00052539 lncRNA downstream 65056 2959505 ~ 2965338 (+) False XLOC_024974
TCONS_00052306 lncRNA downstream 67117 2961566 ~ 2965338 (+) True XLOC_024974
TCONS_00052307 lncRNA downstream 72163 2966612 ~ 2969985 (+) True XLOC_024975
TCONS_00052308 lncRNA downstream 127612 3022061 ~ 3049300 (+) False XLOC_024977
TCONS_00052309 lncRNA downstream 152256 3046705 ~ 3049300 (+) False XLOC_024977
TCONS_00049520 mRNA upstream 128616 2754885 ~ 2757607 (+) True XLOC_024973
TCONS_00049518 mRNA upstream 212580 2669813 ~ 2673643 (+) True XLOC_024971
TCONS_00049517 mRNA upstream 942591 1942219 ~ 1943632 (+) True XLOC_024966
TCONS_00049513 mRNA upstream 1124243 1749793 ~ 1761980 (+) True XLOC_024963
TCONS_00049512 mRNA upstream 1148633 1735214 ~ 1737590 (+) True XLOC_024962
TCONS_00049522 mRNA downstream 64894 2959343 ~ 2961987 (+) False XLOC_024974
TCONS_00049523 mRNA downstream 77403 2971852 ~ 2979129 (+) True XLOC_024976
TCONS_00049524 mRNA downstream 152460 3046909 ~ 3072467 (+) True XLOC_024977
TCONS_00049525 mRNA downstream 205043 3099492 ~ 3100238 (+) True XLOC_024978
TCONS_00049526 mRNA downstream 219094 3113543 ~ 3115574 (+) True XLOC_024979
TCONS_00049514 other upstream 1081741 1782815 ~ 1804482 (+) False XLOC_024964
TCONS_00049515 other upstream 1081741 1783192 ~ 1804482 (+) False XLOC_024964
TCONS_00049516 other upstream 1082878 1788195 ~ 1803345 (+) True XLOC_024964
TCONS_00049505 other upstream 1297622 1586054 ~ 1588601 (+) True XLOC_024955
TCONS_00049504 other upstream 1299798 1576753 ~ 1586425 (+) False XLOC_024955
TCONS_00049552 other downstream 1374905 4269354 ~ 4270546 (+) True XLOC_025004
TCONS_00049569 other downstream 3143754 6038203 ~ 6038338 (+) True XLOC_025028
TCONS_00049575 other downstream 3466432 6360881 ~ 6370802 (+) True XLOC_025032
TCONS_00049594 other downstream 5495106 8389555 ~ 8389671 (+) True XLOC_025061
TCONS_00049598 other downstream 6134045 9028494 ~ 9028642 (+) True XLOC_025069

Expression Profile


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