RNA id: TCONS_00049525


Basic Information

Item Value
RNA id TCONS_00049525
length 747
RNA type mRNA
GC content 0.41
exon number 1
gene id XLOC_024978
representative True

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 3099492 ~ 3100238 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGCAGGACAATGGCCACATTAATATCGTCCTCCTGGGGAAAACCGGAGTTGGAAAAAGCTCATCAGGAAACACCATACTGGGAGAAAACAGATTCAGAAGTGGAAGAAGCCTGTCTGCTGTCACAGATACATCCAGCATTGAGAAATCAGTCACTAATGGCAGATCTGTGTCCGTCATCGACACTCCTGGGTTCTTTTCTACTAATCTTCCTAAAGAGCAGCTGGCAAAGGAGTTAGCGAGGAGTGTTCATCTCTCTGCTTCAGGAGTTCATGCTTTCTTATTTGTTGTGCCGTACGGCAGGTTCACAAAGCAGGAGGAGGACATACTGAAGCGAGTGCGAAAGGTTTTTGGTAAAGATGTGCTGAAGCATGTGATAATCCTCTTCACATACGGGGATGAATGTGAAAAAAAGGAAATTCAGAAAGAGATAGATGAGAATAAAGAAGTCACGAGAGTCGTACAGAGATGTCATGATTATCATGTCTTCAATAACAGAGGTCTGGATGACAAACAGCAGGTCAATGATCTACTGCTGAAAATTGACTTATTGGTACAGGAGAAAGAGTTCTACACAAATGAGATGTATGAATATGCACAAACCTGCACATTTGAATGGTTTTGGGAAAAATCCAAGGTATTTTTCATTGTTCTCATCAATATACTCTTGGGATTAACAAAACTTATAATATCCATGGCACAATTTGTGGATCAGCCACTGTTTACGTTTCAATTTTCTTGTGTATAA

Function

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005525 GTP binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-091116-100 Predicted to enable GTP binding activity. Predicted to be located in membrane. Predicted to be integral component of membrane.

Ensembl:

ensembl_id ENSDART00000154156

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00052308 lncRNA upstream 50192 3022061 ~ 3049300 (+) False XLOC_024977
TCONS_00052309 lncRNA upstream 50192 3046705 ~ 3049300 (+) False XLOC_024977
TCONS_00052307 lncRNA upstream 129507 2966612 ~ 2969985 (+) True XLOC_024975
TCONS_00052539 lncRNA upstream 134154 2959505 ~ 2965338 (+) False XLOC_024974
TCONS_00052306 lncRNA upstream 134154 2961566 ~ 2965338 (+) True XLOC_024974
TCONS_00052310 lncRNA downstream 179371 3279609 ~ 3280874 (+) True XLOC_024981
TCONS_00052311 lncRNA downstream 379066 3479304 ~ 3479704 (+) True XLOC_024983
TCONS_00052540 lncRNA downstream 382764 3483002 ~ 3489660 (+) False XLOC_024984
TCONS_00052543 lncRNA downstream 382880 3483118 ~ 3489660 (+) False XLOC_024984
TCONS_00052542 lncRNA downstream 382880 3483118 ~ 3489660 (+) False XLOC_024984
TCONS_00049524 mRNA upstream 27025 3046909 ~ 3072467 (+) True XLOC_024977
TCONS_00049523 mRNA upstream 120363 2971852 ~ 2979129 (+) True XLOC_024976
TCONS_00049522 mRNA upstream 137505 2959343 ~ 2961987 (+) False XLOC_024974
TCONS_00049519 mRNA upstream 205043 2719243 ~ 2894449 (+) False XLOC_024972
TCONS_00049526 mRNA downstream 13305 3113543 ~ 3115574 (+) True XLOC_024979
TCONS_00049527 mRNA downstream 39002 3139240 ~ 3139974 (+) True XLOC_024980
TCONS_00049528 mRNA downstream 354372 3454610 ~ 3465646 (+) True XLOC_024982
TCONS_00049529 mRNA downstream 369362 3469600 ~ 3481763 (+) False XLOC_024983
TCONS_00049530 mRNA downstream 419369 3519607 ~ 3528258 (+) True XLOC_024985
TCONS_00049514 other upstream 1295010 1782815 ~ 1804482 (+) False XLOC_024964
TCONS_00049515 other upstream 1295010 1783192 ~ 1804482 (+) False XLOC_024964
TCONS_00049516 other upstream 1296147 1788195 ~ 1803345 (+) True XLOC_024964
TCONS_00049505 other upstream 1510891 1586054 ~ 1588601 (+) True XLOC_024955
TCONS_00049504 other upstream 1513067 1576753 ~ 1586425 (+) False XLOC_024955
TCONS_00049552 other downstream 1169116 4269354 ~ 4270546 (+) True XLOC_025004
TCONS_00049569 other downstream 2937965 6038203 ~ 6038338 (+) True XLOC_025028
TCONS_00049575 other downstream 3260643 6360881 ~ 6370802 (+) True XLOC_025032
TCONS_00049594 other downstream 5289317 8389555 ~ 8389671 (+) True XLOC_025061
TCONS_00049598 other downstream 5928256 9028494 ~ 9028642 (+) True XLOC_025069

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000261_00175044_00175947.mRNA True 745 mRNA 0.40 3 CI01000261 175001 ~ 175947 (-)