XLOC_024983 (zgc:171426)


Basic Information

Item Value
gene id XLOC_024983
gene name zgc:171426
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 3469600 ~ 3481763 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00049529
TAGCTGGAGCTCTGTTGGGTTCATGATTTGTGGATTGTAGCAGCCATTGCGTAGGGTTTCTGAAGGAGGCGCTTTAGATGATTGCTCTTCATGGCTGTAATGGAGAACATTGTTTGGAGATGGCTCATTCTAGTCCTTTTCTTCTGCTTTGCTGATGGACGGAGTTCTGAACTTTTTTATGTTGATAACCCGAGCCAGACTGGACCCGTCACTGATGGACGGGGCTCTGGGCCGTTTTTCATGGTGACGTTTCCTTCTTTGATTGAGTCTGGCTCTGATGCTAAACTGTGCGCTAGTCTTCTGAAGCCCAAAGACCGGTTCACCATGACCATTTCTCTGGTCGATGAGAAAAACATAGAAACTCGACTTGTGCGTCAGGCGTCCCAGAGGAAGCTTCACCGCTGTTTTAAATTCCAGGCTCCTCAAGTAAATGGAGATTCAGTGCAGACTGTGAGGGTGGTCGTTCAAGGACGGTCTTTCAAAATGACTGAAGAGAGTAAAGTGATGTTCAGGTCTTACCTGCCTCTGACCTTCATCCAGACAGACAAACCGCTCTACAATCCAGGACAGACAGTGTTCAACTATCTGTCCCAATGCATCAAGGTTCAAGTGACTCCAACACCATCCTCCAACTTCACTCTTAAATCCCTCAATGATGACCATTCATACACTCTCTCTGCCAATGGGAGGAAGACCTTCAAATGGGATTTATCTGCTTCTGTTCTTGGAACTTTAAATGTGACTGTCAGTGCTGAGGCCAGTCCATCCCAGGAGTTGTGCGACAATGACATAGTGACTGTACCATCAAGCGGACGCATTGACGTAGTCACTCGAAGTCTGCTGGTTCTAGCTGAAGGAGTCAAAAGGACCTTCACCCGGAGTTGGTTACTCTGTCCAAAGGGAAGCATGCTTTCAGAGAATGTGAAGATCACCTTTCCGGCAAACATCATCAAGGGATCTGCCAGATGCTCTGTATCAGTCATTGGGGACATAATGGGTCGCTCCCTGAGGAATCTGGCTAACTTGCTACAGATGCCTTATGGCTGTGGAGAACAGAACATGATCATTCTTGCTCCCAATATATACACCTTACGGTATCTGAAAGAAACTGCACAGCTCACTCCAGCCATCCAAGACACTGCCACGAGTTATCTTCAGAGTGGTTATCAAGGAGAGCTGAACTACAGGCACCGCGATGGTTCATTCAGCACTTTTGGTTATGATGCATCCAATACATGGTTGACCGCCTTTGTCATGAGGACTTTTGGTCTAGCAAGAAGCTTCACCTACATAGATCCCAATGTTCTTAAGGGTGCAAAGGACTGGTTGATTGGCACGCAGGGTTCAGACGGCTGTTTCGTGCAGCAGGGCACTCTCTACCACAATGACATGAAGGGTGGCGTGGACGATAACGTGACAATGACTGGCTACATCGTTGCATCGCTGCTTGAAATTGGAGTCCCTGTTACGGATCCTGTCATTACGAAGGCTCTGTCGTTTTTGAGGCCTCTTGTTGGGAATCTGGGAAACACCTATGTCACTGCTCTGCTGGCCTACACCTTCAGTCTGGCTGGAGAGACCAGAACTCGAGCACAGCTTTTAAATTCCTTGAGAAACACTGCCATTTCTGAAGGTACTACTCTCCACTGGTCTCAGACTTCATCTGGGGATACTCTGGCAGTGGAGATCAGTGCATATGTGCTGCTAGCGGTTCTCACTCTACAGCCTGTGACCACTGCTAATCTGGGCTATGCTAACCGCATTGTCAACTGGCTCGTGGCCCAGCAGAATCCCTATGGTGGCTTTACCTCCACTCAGGACACAGTGGTGGCTCTTCAGGCCTTGGCTCTGTATGCAGCTCAGGTTTTCAGCCCTGGAGGCTCCAGCAAAGTTACTGTTCAGTCCTCCGTGCCAACAGGAGACGTTTTCCACTTTGCAGTGACTCCCAACAACCGCCTGCTGTACCAGGAGAGTCCACTGAAGAACTTCCCTGGCACATATAGTGTTGCAGCAACAGGATCTGCCTGTGTTTCTGCGCAGgttgcCTGTTTCTACAACATCCCGACACCTCCTGTTAGGTTTTCCAAAACACTGAGTGTTGGTGCAAAGGTTACTGGAGACTGCCAAGCTGTACCAGTCAACCTCATGTTGACCTTCACAGTGAGATACACTGGTCCAAAGCCAACTACTAACATGGTTCTGGTGGACATCAAGCTCTTGTCAGGATTCACTGCTGACACCTCACTGCTTGGATCTCCACCTAATTTCACTCCATTCGTGCAGAGAGTTGATGCTGAAGGTGATCATGTCCTTGTCTATCTACAAGAGGTTCCCAAAGGTGTTCCAGTGACCTTCAGTATACAGCTGACACAGGCTGTTGCAGTGAAGAATCTCAAGCCAGCGGTCATCAATATTTATGACTATTACCAGAGAAGTGACCGTTTTGAGACCAAATATACATCCTCATGTCGATGATGGTGTTTTAGTtgactaaatacatttttataaattaaaataaaactcatcCTACAATG
>TCONS_00052311
TACTACTCTCCACTGGTCTCAGACTTCATCTGGGGATACTCTGGCAGTGGAGATCAGTGCATATGTGCTGCTAGCGGTTCTCACTCTACAGCCTGTGACCACTGCTAATCTGGGCTATGCTAACCGCATTGTCAACTGGCTCGTGGCCCAGCAGAATCCCTATGGTGGCTTTACCTCCACTCAGGTGAGTTCAGCTAGCAAATGGTACCATAGTTCAGACATGGTTTGTTGCTCacactttaaaatgcatttaatcaGGGCATTATGCAACATGTACTGAAACTGCTTTGATTACCTGGAAGCTCTTATACAGgtgccctagtagcaaagaattctggtccAGATTTGGCATTAAGCTgggacagcaggcattcatccggcactggcatacagcatgtggg

Function

symbol description
zgc:171426 Predicted to be located in extracellular space.

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0005576 extracellular region cellular_component
GO:0005615 extracellular space cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-080212-2 Predicted to be located in extracellular space.

Ensembl:

ensembl_id ENSDARG00000074764

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00049529 False 2534 mRNA 0.48 20 3469600 3481763
TCONS_00052311 True 401 lncRNA 0.48 1 3479304 3479704

Neighbor

gene id symbol gene type direction distance location
XLOC_024982 zgc:165453 coding upstream 3954 3454610 ~ 3465646 (+)
XLOC_024970 NA coding upstream 155404 2570435 ~ 3314196 (+)
XLOC_024969 NA coding upstream 157576 2570069 ~ 3312024 (+)
XLOC_024981 NA coding upstream 188726 3279609 ~ 3280874 (+)
XLOC_024968 NA coding upstream 303406 2473420 ~ 3166194 (+)
XLOC_024984 NA coding downstream 1239 3483002 ~ 3489660 (+)
XLOC_024985 cdc42ep1b coding downstream 37844 3519607 ~ 3528258 (+)
XLOC_024986 CR589947.1 coding downstream 64062 3545825 ~ 3550612 (+)
XLOC_024987 NA coding downstream 90064 3571827 ~ 3572831 (+)
XLOC_024988 CR589947.2 coding downstream 91933 3573696 ~ 3578297 (+)
XLOC_025429 BX649540.1 misc downstream 26766976 30248739 ~ 30249036 (+)
XLOC_024977 NA non-coding upstream 397133 3022061 ~ 3072467 (+)
XLOC_024992 NA non-coding downstream 187871 3669634 ~ 3674174 (+)
XLOC_024999 BX005421.3 non-coding downstream 566026 4047789 ~ 4214905 (+)
XLOC_025002 NA non-coding downstream 756073 4237836 ~ 4294925 (+)

Expression


Co-expression Network