RNA id: TCONS_00049529


Basic Information

Item Value
RNA id TCONS_00049529
length 2534
RNA type mRNA
GC content 0.48
exon number 20
gene id XLOC_024983
representative False

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 3469600 ~ 3481763 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TAGCTGGAGCTCTGTTGGGTTCATGATTTGTGGATTGTAGCAGCCATTGCGTAGGGTTTCTGAAGGAGGCGCTTTAGATGATTGCTCTTCATGGCTGTAATGGAGAACATTGTTTGGAGATGGCTCATTCTAGTCCTTTTCTTCTGCTTTGCTGATGGACGGAGTTCTGAACTTTTTTATGTTGATAACCCGAGCCAGACTGGACCCGTCACTGATGGACGGGGCTCTGGGCCGTTTTTCATGGTGACGTTTCCTTCTTTGATTGAGTCTGGCTCTGATGCTAAACTGTGCGCTAGTCTTCTGAAGCCCAAAGACCGGTTCACCATGACCATTTCTCTGGTCGATGAGAAAAACATAGAAACTCGACTTGTGCGTCAGGCGTCCCAGAGGAAGCTTCACCGCTGTTTTAAATTCCAGGCTCCTCAAGTAAATGGAGATTCAGTGCAGACTGTGAGGGTGGTCGTTCAAGGACGGTCTTTCAAAATGACTGAAGAGAGTAAAGTGATGTTCAGGTCTTACCTGCCTCTGACCTTCATCCAGACAGACAAACCGCTCTACAATCCAGGACAGACAGTGTTCAACTATCTGTCCCAATGCATCAAGGTTCAAGTGACTCCAACACCATCCTCCAACTTCACTCTTAAATCCCTCAATGATGACCATTCATACACTCTCTCTGCCAATGGGAGGAAGACCTTCAAATGGGATTTATCTGCTTCTGTTCTTGGAACTTTAAATGTGACTGTCAGTGCTGAGGCCAGTCCATCCCAGGAGTTGTGCGACAATGACATAGTGACTGTACCATCAAGCGGACGCATTGACGTAGTCACTCGAAGTCTGCTGGTTCTAGCTGAAGGAGTCAAAAGGACCTTCACCCGGAGTTGGTTACTCTGTCCAAAGGGAAGCATGCTTTCAGAGAATGTGAAGATCACCTTTCCGGCAAACATCATCAAGGGATCTGCCAGATGCTCTGTATCAGTCATTGGGGACATAATGGGTCGCTCCCTGAGGAATCTGGCTAACTTGCTACAGATGCCTTATGGCTGTGGAGAACAGAACATGATCATTCTTGCTCCCAATATATACACCTTACGGTATCTGAAAGAAACTGCACAGCTCACTCCAGCCATCCAAGACACTGCCACGAGTTATCTTCAGAGTGGTTATCAAGGAGAGCTGAACTACAGGCACCGCGATGGTTCATTCAGCACTTTTGGTTATGATGCATCCAATACATGGTTGACCGCCTTTGTCATGAGGACTTTTGGTCTAGCAAGAAGCTTCACCTACATAGATCCCAATGTTCTTAAGGGTGCAAAGGACTGGTTGATTGGCACGCAGGGTTCAGACGGCTGTTTCGTGCAGCAGGGCACTCTCTACCACAATGACATGAAGGGTGGCGTGGACGATAACGTGACAATGACTGGCTACATCGTTGCATCGCTGCTTGAAATTGGAGTCCCTGTTACGGATCCTGTCATTACGAAGGCTCTGTCGTTTTTGAGGCCTCTTGTTGGGAATCTGGGAAACACCTATGTCACTGCTCTGCTGGCCTACACCTTCAGTCTGGCTGGAGAGACCAGAACTCGAGCACAGCTTTTAAATTCCTTGAGAAACACTGCCATTTCTGAAGGTACTACTCTCCACTGGTCTCAGACTTCATCTGGGGATACTCTGGCAGTGGAGATCAGTGCATATGTGCTGCTAGCGGTTCTCACTCTACAGCCTGTGACCACTGCTAATCTGGGCTATGCTAACCGCATTGTCAACTGGCTCGTGGCCCAGCAGAATCCCTATGGTGGCTTTACCTCCACTCAGGACACAGTGGTGGCTCTTCAGGCCTTGGCTCTGTATGCAGCTCAGGTTTTCAGCCCTGGAGGCTCCAGCAAAGTTACTGTTCAGTCCTCCGTGCCAACAGGAGACGTTTTCCACTTTGCAGTGACTCCCAACAACCGCCTGCTGTACCAGGAGAGTCCACTGAAGAACTTCCCTGGCACATATAGTGTTGCAGCAACAGGATCTGCCTGTGTTTCTGCGCAGgttgcCTGTTTCTACAACATCCCGACACCTCCTGTTAGGTTTTCCAAAACACTGAGTGTTGGTGCAAAGGTTACTGGAGACTGCCAAGCTGTACCAGTCAACCTCATGTTGACCTTCACAGTGAGATACACTGGTCCAAAGCCAACTACTAACATGGTTCTGGTGGACATCAAGCTCTTGTCAGGATTCACTGCTGACACCTCACTGCTTGGATCTCCACCTAATTTCACTCCATTCGTGCAGAGAGTTGATGCTGAAGGTGATCATGTCCTTGTCTATCTACAAGAGGTTCCCAAAGGTGTTCCAGTGACCTTCAGTATACAGCTGACACAGGCTGTTGCAGTGAAGAATCTCAAGCCAGCGGTCATCAATATTTATGACTATTACCAGAGAAGTGACCGTTTTGAGACCAAATATACATCCTCATGTCGATGATGGTGTTTTAGTtgactaaatacatttttataaattaaaataaaactcatcCTACAATG

Function

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0005576 extracellular region cellular_component
GO:0005615 extracellular space cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-080212-2 Predicted to be located in extracellular space.

Ensembl:

ensembl_id ENSDART00000113616

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00052537 lncRNA upstream 155404 2570435 ~ 3314196 (+) False XLOC_024970
TCONS_00052538 lncRNA upstream 155404 2571612 ~ 3314196 (+) True XLOC_024970
TCONS_00052536 lncRNA upstream 157576 2570069 ~ 3312024 (+) True XLOC_024969
TCONS_00052310 lncRNA upstream 188726 3279609 ~ 3280874 (+) True XLOC_024981
TCONS_00052534 lncRNA upstream 303406 2473427 ~ 3166194 (+) False XLOC_024968
TCONS_00052540 lncRNA downstream 1239 3483002 ~ 3489660 (+) False XLOC_024984
TCONS_00052543 lncRNA downstream 1355 3483118 ~ 3489660 (+) False XLOC_024984
TCONS_00052542 lncRNA downstream 1355 3483118 ~ 3489660 (+) False XLOC_024984
TCONS_00052541 lncRNA downstream 1355 3483118 ~ 3489660 (+) True XLOC_024984
TCONS_00052312 lncRNA downstream 90064 3571827 ~ 3572831 (+) True XLOC_024987
TCONS_00049528 mRNA upstream 3954 3454610 ~ 3465646 (+) True XLOC_024982
TCONS_00049527 mRNA upstream 329626 3139240 ~ 3139974 (+) True XLOC_024980
TCONS_00049526 mRNA upstream 354026 3113543 ~ 3115574 (+) True XLOC_024979
TCONS_00049525 mRNA upstream 369362 3099492 ~ 3100238 (+) True XLOC_024978
TCONS_00049524 mRNA upstream 397133 3046909 ~ 3072467 (+) True XLOC_024977
TCONS_00049530 mRNA downstream 37844 3519607 ~ 3528258 (+) True XLOC_024985
TCONS_00049531 mRNA downstream 64062 3545825 ~ 3550612 (+) True XLOC_024986
TCONS_00049532 mRNA downstream 91933 3573696 ~ 3578297 (+) True XLOC_024988
TCONS_00049533 mRNA downstream 116792 3598555 ~ 3603348 (+) True XLOC_024989
TCONS_00049534 mRNA downstream 128377 3610140 ~ 3634849 (+) True XLOC_024990
TCONS_00049514 other upstream 1665118 1782815 ~ 1804482 (+) False XLOC_024964
TCONS_00049515 other upstream 1665118 1783192 ~ 1804482 (+) False XLOC_024964
TCONS_00049516 other upstream 1666255 1788195 ~ 1803345 (+) True XLOC_024964
TCONS_00049505 other upstream 1880999 1586054 ~ 1588601 (+) True XLOC_024955
TCONS_00049504 other upstream 1883175 1576753 ~ 1586425 (+) False XLOC_024955
TCONS_00049552 other downstream 787591 4269354 ~ 4270546 (+) True XLOC_025004
TCONS_00049569 other downstream 2556440 6038203 ~ 6038338 (+) True XLOC_025028
TCONS_00049575 other downstream 2879118 6360881 ~ 6370802 (+) True XLOC_025032
TCONS_00049594 other downstream 4907792 8389555 ~ 8389671 (+) True XLOC_025061
TCONS_00049598 other downstream 5546731 9028494 ~ 9028642 (+) True XLOC_025069

Expression Profile

//