Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00049534 |
| length | 1831 |
| RNA type | mRNA |
| GC content | 0.46 |
| exon number | 13 |
| gene id | XLOC_024990 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_007114.7 |
| NCBI id | CM002887.2 |
| chromosome length | 62628489 |
| location | 3610140 ~ 3634849 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0006886 | intracellular protein transport | biological_process |
| GO:0097061 | dendritic spine organization | biological_process |
| GO:0097062 | dendritic spine maintenance | biological_process |
| GO:0002092 | positive regulation of receptor internalization | biological_process |
| GO:0043113 | receptor clustering | biological_process |
| GO:0034315 | regulation of Arp2/3 complex-mediated actin nucleation | biological_process |
| GO:0032588 | trans-Golgi network membrane | cellular_component |
| GO:0098842 | postsynaptic early endosome | cellular_component |
| GO:0043005 | neuron projection | cellular_component |
| GO:0045202 | synapse | cellular_component |
| GO:0008021 | synaptic vesicle | cellular_component |
| GO:0014069 | postsynaptic density | cellular_component |
| GO:0005737 | cytoplasm | cellular_component |
| GO:0005080 | protein kinase C binding | molecular_function |
| GO:0005543 | phospholipid binding | molecular_function |
| GO:0019904 | protein domain specific binding | molecular_function |
| id | description |
|---|---|
| ko04990 | Domain-containing proteins not elsewhere classified |
| id | description |
|---|---|
| ZDB-GENE-061013-283 | Predicted to enable phospholipid binding activity and protein kinase C binding activity. Predicted to be involved in several processes, including dendritic spine maintenance; positive regulation of receptor internalization; and regulation of Arp2/3 complex-mediated actin nucleation. Predicted to be located in several cellular components, including cytoskeleton; perinuclear region of cytoplasm; and synapse. Predicted to be active in several cellular components, including cytoplasmic vesicle; postsynaptic density; and trans-Golgi network membrane. Orthologous to human PICK1 (protein interacting with PRKCA 1). |
| ensembl_id | ENSDART00000104977 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00052312 | lncRNA | upstream | 37309 | 3571827 ~ 3572831 (+) | True | XLOC_024987 |
| TCONS_00052540 | lncRNA | upstream | 120480 | 3483002 ~ 3489660 (+) | False | XLOC_024984 |
| TCONS_00052544 | lncRNA | downstream | 34785 | 3669634 ~ 3674174 (+) | False | XLOC_024992 |
| TCONS_00052545 | lncRNA | downstream | 36238 | 3671087 ~ 3674174 (+) | False | XLOC_024992 |
| TCONS_00052546 | lncRNA | downstream | 36932 | 3671781 ~ 3674174 (+) | True | XLOC_024992 |
| TCONS_00049544 | lncRNA | downstream | 412940 | 4047789 ~ 4059144 (+) | False | XLOC_024999 |
| TCONS_00052313 | lncRNA | downstream | 413138 | 4047987 ~ 4049303 (+) | False | XLOC_024999 |
| TCONS_00049533 | mRNA | upstream | 6792 | 3598555 ~ 3603348 (+) | True | XLOC_024989 |
| TCONS_00049532 | mRNA | upstream | 31843 | 3573696 ~ 3578297 (+) | True | XLOC_024988 |
| TCONS_00049531 | mRNA | upstream | 59528 | 3545825 ~ 3550612 (+) | True | XLOC_024986 |
| TCONS_00049530 | mRNA | upstream | 81882 | 3519607 ~ 3528258 (+) | True | XLOC_024985 |
| TCONS_00049529 | mRNA | upstream | 128377 | 3469600 ~ 3481763 (+) | False | XLOC_024983 |
| TCONS_00049535 | mRNA | downstream | 6580 | 3641429 ~ 3670604 (+) | True | XLOC_024991 |
| TCONS_00049536 | mRNA | downstream | 46267 | 3681116 ~ 3686482 (+) | True | XLOC_024993 |
| TCONS_00049537 | mRNA | downstream | 58568 | 3693417 ~ 3695256 (+) | True | XLOC_024994 |
| TCONS_00049538 | mRNA | downstream | 105880 | 3740729 ~ 3741748 (+) | True | XLOC_024995 |
| TCONS_00049539 | mRNA | downstream | 176070 | 3810919 ~ 3821845 (+) | True | XLOC_024996 |
| TCONS_00049514 | other | upstream | 1805658 | 1782815 ~ 1804482 (+) | False | XLOC_024964 |
| TCONS_00049515 | other | upstream | 1805658 | 1783192 ~ 1804482 (+) | False | XLOC_024964 |
| TCONS_00049516 | other | upstream | 1806795 | 1788195 ~ 1803345 (+) | True | XLOC_024964 |
| TCONS_00049505 | other | upstream | 2021539 | 1586054 ~ 1588601 (+) | True | XLOC_024955 |
| TCONS_00049504 | other | upstream | 2023715 | 1576753 ~ 1586425 (+) | False | XLOC_024955 |
| TCONS_00049552 | other | downstream | 634505 | 4269354 ~ 4270546 (+) | True | XLOC_025004 |
| TCONS_00049569 | other | downstream | 2403354 | 6038203 ~ 6038338 (+) | True | XLOC_025028 |
| TCONS_00049575 | other | downstream | 2726032 | 6360881 ~ 6370802 (+) | True | XLOC_025032 |
| TCONS_00049594 | other | downstream | 4754706 | 8389555 ~ 8389671 (+) | True | XLOC_025061 |
| TCONS_00049598 | other | downstream | 5393645 | 9028494 ~ 9028642 (+) | True | XLOC_025069 |
| species | RNA id | representative | length | rna type | GC content | exon number | chromosome id | location |
|---|---|---|---|---|---|---|---|---|
| grasscarp (Ctenopharyngodon idella) | CI01149870_00000209_00014269.mRNA | True | 1263 | mRNA | 0.53 | 14 | CI01149870 | 209 ~ 14269 (-) |
| striped catfish (Pangasianodon hypophthalmus) | TU23778 | True | 229 | lncRNA | 0.23 | 2 | NC_047596.1 | 1461684 ~ 1461933 (-) |
| tiger barb (Puntius tetrazona) | TU23778 | True | 951 | TUCP | 0.57 | 9 | NC_056701.1 | 1616236 ~ 1649494 (+) |
