RNA id: TCONS_00049457


Basic Information

Item Value
RNA id TCONS_00049457
length 805
RNA type processed_transcript
GC content 0.36
exon number 3
gene id XLOC_024918
representative True

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 420342 ~ 422738 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

tgacggtgacggccacggcgaagggctatgcgtcagagccatagcatacgccggcgtttgacgcagaagtataaatcagccttaagtcaagaaccaaatgaaGCACCAGAGTACAGATTATGGGGGTATCTGAAGTTGAACTAACTGGAAGCAGGGAACCATACTAATGAAGTTCCTTGagcagGTTCCTTGTAAAGATTAACCCAGGGAAGGATCGAAAGTGGAGAAGACCAGATCAAGAAAGACTACATCAAGATCTGCGGTCAGTTCAAAGGATGTTTTGCATTGGACTGTTTTTTTTGGCTTTGACCCTTGCTTGCCCCTGACCTCACTCTTGGACCGCCCTGTtggattttcagtttatttaatttaaaaaaaattttttggttctgggtagatgctaataaatatttaattgtaattatttaatgtaaatcaaaggcggcaacaccaaggctccaaaaatacaaatttattaaattaaaaaggctgacacagagcgtgaaACGTTTCGAGccgccggctcttcatcagacaaatTATTTTtcgttgtaatttttttaatatgtttttgttaaatatgcgatttctgtgtttgttctgtctactcgtacttgtttatcttgtttctgtaattatcatttgtttatttgacccttGCCTCGCCTCTGATCTTGTTTTTGGATTGCcctttatatatctttttaattattGGTTCTAGTTATatggttataaaatatttgttaatttaattaatatgcattttataaaaaaaatatatatatatattttctgtgtttttttt

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000137723

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00052301 lncRNA upstream 42733 377326 ~ 377609 (+) True XLOC_024917
TCONS_00052516 lncRNA upstream 56025 349707 ~ 364317 (+) True XLOC_024916
TCONS_00052514 lncRNA upstream 273409 99666 ~ 146933 (+) False XLOC_024912
TCONS_00052515 lncRNA upstream 273409 100649 ~ 146933 (+) True XLOC_024912
TCONS_00052512 lncRNA upstream 288176 27413 ~ 132166 (+) False XLOC_024911
TCONS_00052517 lncRNA downstream 49443 472181 ~ 474964 (+) False XLOC_024921
TCONS_00049463 lncRNA downstream 49443 472181 ~ 474964 (+) True XLOC_024921
TCONS_00052518 lncRNA downstream 99920 522658 ~ 523822 (+) True XLOC_024922
TCONS_00052519 lncRNA downstream 284346 707084 ~ 763687 (+) True XLOC_024926
TCONS_00049473 lncRNA downstream 483781 906519 ~ 909941 (+) False XLOC_024933
TCONS_00049453 mRNA upstream 106812 155659 ~ 313530 (+) False XLOC_024913
TCONS_00049458 mRNA downstream 8470 431208 ~ 442868 (+) False XLOC_024919
TCONS_00049459 mRNA downstream 8512 431250 ~ 440125 (+) False XLOC_024919
TCONS_00049460 mRNA downstream 19832 442570 ~ 454166 (+) True XLOC_024919
TCONS_00049461 mRNA downstream 41389 464127 ~ 630986 (+) False XLOC_024920
TCONS_00049462 mRNA downstream 41404 464142 ~ 470933 (+) True XLOC_024920
TCONS_00049471 other downstream 419995 842733 ~ 854630 (+) True XLOC_024931
TCONS_00049501 other downstream 1131564 1554302 ~ 1559477 (+) False XLOC_024954
TCONS_00049502 other downstream 1134115 1556853 ~ 1682090 (+) True XLOC_024954
TCONS_00049503 other downstream 1150112 1572850 ~ 1576295 (+) False XLOC_024955
TCONS_00049504 other downstream 1154015 1576753 ~ 1586425 (+) False XLOC_024955

Expression Profile

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