RNA id: TCONS_00049463


Basic Information

Item Value
RNA id TCONS_00049463
length 1206
lncRNA type intronic
GC content 0.42
exon number 3
gene id XLOC_024921
representative True

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 472181 ~ 474964 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CAGAGCACACAGTCGCGTTCTTAGTTTTGGGAGAAATTAAGCTGCTTCTCGTCATGTATTTTGCTCAAGAGATGTCTGTGAGCAGCTCCAGTCCAGATGATGCAGTGATGGGCAGGGAAGGTGCTAGAAAAAGCTCATCTGCAAATACTAGACTGGGAGAAAACAGGTTTATAGATCAGGAGAGTGGAGTTATCGAGGGTCAAACACAGATCAGACACAGACAGGATGATGTGCTGGAGAACAGAGGGAAATGCATCAAAAGGAAAAGCAGTATGGACAATCTTGTCAACTTTTCAGGAGAGACTCCAGCTATGACTGATGAGATTCCTCAGAGGAAAGATCAGATCAGGCTGCTTCTGCTGGGACTGACAGGAGTGGGGGGAATTGTCAGTGTAAACACCATCAGCAGCAGAAACTGCATTCAGTTCTTCATCAGTTCAGTTTCTCAGTGTCAGTCAGAAACTATAGTGAGGAACAGAAAACTGGTCTCAGTCATCAACACTGCTGGATTGTGTGACAGCTTGTATAAAGCACAGTTAAGAGGATTTGGATGACAGAGTGTAAACAAATCATTGCAGAAATGCAGACGTGACGGCAGTCGAGTCTCAACATGAAGCTGTCAGGGTGGGTGTTGATCTGGATGGTGGATTTCTGTCACATCCACAGCCTCTGTTTCTGCCTGTTTCAAACCATCTATCCTCACAGTAGATCAGCTCTTTAGAGAAGGAGGATAATATGCAGCCTGTGATCTCTGCTACAGTATATAATGTATAACAGCTATAATGATCTGCTTCAGGAGTGACGTTTACATTTAATGAACGTCAACAGTGATATTTACAGTATACTAgactgaactgaatcagtttcAGTTTATCTAGAGCTACAGCAGCTTTCTCCAGCTGCCAGATGAGCTGGAATAATCATCAATCTGCAGCATCAGGGCTCTTTCTTCATCTGTGTAGCTGATTTGACAgtttatattgtataaatatatagatgaattgaattaaacatgATGCTGAACATGAAAAGCATTCAAACGTTCTGTATATAacactttataagtgctaataaacagttaatattaaACATTCAGCTTATCAATGTGTATCTATTGCTGCattggcaggtgtgtgtgtgtgtgtctctcccGCTCTTTACATCTGCAGGCCCTGCCCTAGTATGCAGATGACGTGCCCTGGGATT

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00052301 lncRNA upstream 94572 377326 ~ 377609 (+) True XLOC_024917
TCONS_00052516 lncRNA upstream 107864 349707 ~ 364317 (+) True XLOC_024916
TCONS_00052514 lncRNA upstream 325248 99666 ~ 146933 (+) False XLOC_024912
TCONS_00052515 lncRNA upstream 325248 100649 ~ 146933 (+) True XLOC_024912
TCONS_00052513 lncRNA upstream 384141 27475 ~ 88040 (+) True XLOC_024911
TCONS_00052518 lncRNA downstream 47694 522658 ~ 523822 (+) True XLOC_024922
TCONS_00052519 lncRNA downstream 232120 707084 ~ 763687 (+) True XLOC_024926
TCONS_00049473 lncRNA downstream 431555 906519 ~ 909941 (+) False XLOC_024933
TCONS_00049474 lncRNA downstream 431623 906587 ~ 909941 (+) False XLOC_024933
TCONS_00052520 lncRNA downstream 431907 906871 ~ 907267 (+) False XLOC_024933
TCONS_00049462 mRNA upstream 1248 464142 ~ 470933 (+) True XLOC_024920
TCONS_00049460 mRNA upstream 18015 442570 ~ 454166 (+) True XLOC_024919
TCONS_00049458 mRNA upstream 29313 431208 ~ 442868 (+) False XLOC_024919
TCONS_00049459 mRNA upstream 32056 431250 ~ 440125 (+) False XLOC_024919
TCONS_00049456 mRNA upstream 158651 311833 ~ 313530 (+) True XLOC_024913
TCONS_00049464 mRNA downstream 57898 532862 ~ 545668 (+) True XLOC_024923
TCONS_00049465 mRNA downstream 137468 612432 ~ 622553 (+) True XLOC_024924
TCONS_00049466 mRNA downstream 159718 634682 ~ 774223 (+) True XLOC_024925
TCONS_00049467 mRNA downstream 234429 709393 ~ 800315 (+) True XLOC_024927
TCONS_00049468 mRNA downstream 251036 726000 ~ 737904 (+) True XLOC_024928
TCONS_00049457 other upstream 49443 420342 ~ 422738 (+) True XLOC_024918
TCONS_00049471 other downstream 367769 842733 ~ 854630 (+) True XLOC_024931
TCONS_00049501 other downstream 1079338 1554302 ~ 1559477 (+) False XLOC_024954
TCONS_00049502 other downstream 1081889 1556853 ~ 1682090 (+) True XLOC_024954
TCONS_00049503 other downstream 1097886 1572850 ~ 1576295 (+) False XLOC_024955
TCONS_00049504 other downstream 1101789 1576753 ~ 1586425 (+) False XLOC_024955