XLOC_024911


Basic Information

Item Value
gene id XLOC_024911
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 5513 ~ 132166 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00052510
CCTTTATTGAATCAGGGAGCTACAGAGGACACGAACTGAAAGATGATCAACGTGAATCCCGAATGGAAATGAGTTTAGAGTTACTGATGTCATGTGTgctgcttttctccagtgtggactTTCAGGTGTTTCTTAAGCTGCCGTGAGTGTGTGAATCTCTCCAGACACTGATCACATGAGTacggtttctctctagtgtggatcttcTGGTGTCGATTCCGATGTGCTAAAGACCTGAATCTCttatcacagtgtgaacacttgtaaggtttctctccagtgtgagtcctctcatgtAATTTCTGATATTCTAAATGAgcgaatctcttgtcgcagtgtgaacacttgtacggtttctctccagtgtggatcctctggTGCAGTTTCAAATGTTCAGGTTTAATGAAAGTCTTCTCACAGTCAAAGCACATATACTCCTttacaccagtgtggatcttctgatgttgTTTTAAGTTTGACTGTGTTGTAAatctctttccacactcagagcatgaataaggcttctcctttgtatgaGTTCTGAGATGACGTTTCAGCGTTGATGCCCTAAAAAATGCTCTGCCACATTGATCACATCTGTGttttctctctccagtgtggatcatcatgtgttcttTAAGGGATGATGAgagtctgaaactcttcccacaatgagtgcatgAAAACgggttctctccagtgtggatcatcatgtgttgagtAAGGGATAATGAGTGTCTGAAACTCGTCCcgcattgagtgcatgtgaatggtttctctccagtgtgaatcatcatgtgttgattgagACTCTTTTTGTTTGccagactctttccacactgactgCAGGTCAAACATTTCTTGACTCTTTGCATTAAAGTATTTTCAGTCTGTAAATGAGGTGTTTTTCCAGCTTTTAGGAGTTCATCATCTTCACTCTCT
>TCONS_00052511
CgggttctctccagtgtggatcatcatgtgttgagtAAGGGATAATGAGTGTCTGAAACTCGTCCcgcattgagtgcatgtgaatggtttctctccagtgtgaatcatcatgtgttgattgagACTCTTTTTGTTTGccagactctttccacactgactgCAGGTCAAACATTTCTTGTCTCTTTGCATTAAAGCATCTTCAGTCTGTAAATGAGGTGTTTTCTCAGCTTTTAGGAGTTcatcatcttcactctcctcACTCTCT
>TCONS_00052512
ttattttacatctacagaatcaggagaaaatcctgatctttattttaagcaaaacaatcGCGATTCTCCTTTTAGCCAGATTCGTGCAGCTCTACTGTGTTTACTGTTTTTATGTATCATTTATAGATGCTTTGGCAACACATTGGTAACATTCGTCATGCCGATAAAGCAATTAATAAACTGAACTGACAAACCAGCCTTGCACAGGAGAGAATGTCTTTCTGCACTGACGTCATATGTActgcttctccccagtgtgaatcctctcatgtgttttcagattTGTTAACTGACAGAATCTCttatcacagtgtgaacacttgtacggcttctctccagtgtggatcctctggTGGTGTTTCAGTTCTGTagttgtaataaaagtcttcccacactcaaagcacatatgaTCTTTTATACCAGTATGGATCCTCTGATGTGATCTTAAACTTGAATGCTgcgtgaaactctttccacactcagagcatgaatgaggcttctcctttgtatgaACTCTGAGATGGAGTTTCAGCTCGTACGCCCTCAAGAATGCTTTGCCGCATTGATCACATCTGTgggttttctctccagtgtggatcttcatgtgctGATAAAGGTAGTGTGAATgcgtgaaactcttcccacagtgtGTGCACGTGAATCTTTTTTTCCCattgtggatcttcatgtgttcattaaaggCGGATAagtgtctgaaactcttcccacactgagtgcatgtgaatggtttctctccagtgtggatcatcatgtgttcattaaggctCTTTTTGCTTGCCagactcttcccacactgactgcAGGTCAAACATTTCTTGTCTCTTTGCATTAAAGCATCTTCAGTCTGTAAATGAGGTGTTTTCTCAGCTTTTAGGAGTTcatcatcttcactctcctcACTCTCTTCACTAAGATCTAAAATCAAGGTAAAGAGgttcagtttttttgtgcaaccccaaa
>TCONS_00052513
ATTCTCCTTTTAGCCAGATTCGTGCAGCTCTACTGTGTTTACTGTTTTTATGTATCATTTATAGATGCTTTGGCAACACATTGGTAACATTCGTCATGCCGATAAAGCAATTAATAAACTGAACTGACAAACCAGCCTTGCACAGGAGAGAATGTCTTTCTGCACTGACGTCATATGTActgcttctccccagtgtgaatcctctcatgtgttttcagattTGTTAACTGACAGAATCTCttatcacagtgtgaacacttgtacggcttctctccagtgtggatcctctggTGGTGTTTCAGTTCTGTagttgtaataaaagtcttcccacactcaaagcacatatgaTCTTTTATACCAGTATGGATCCTCTGATGTGATCTTAAACTTGAATGCTgcgtgaaactctttccacactcagagcatgaatgaggcttctcctttgtatgaACTCTGAGATGGAGTTTCAGCTCGTACGCCCTCAAGAATGCTTTGCCGCATTGATCACATCTGTgggttttctctccagtgtggatcttcatgtgctGATAAAGGTAGTGTGAATgcgtgaaactcttcccacagtgtGTGCACGTGAATCTTTTTTTCCCattgtggatcttcatgtgttcattaaaggCGGATAagtgtctgaaactcttcccacactgagtgcatgtgaatggtttctctccagtgtggatcatcatgtgttcattaaggctCTTTTTGCTTGCCagactcttcccacactgactgcAGGTCAAACATTTCTTGTCTCTTTGCATTAAAGCATCTTCAGTCTGTAAATGAGGTGTTTTCCCAGCTTTTAGGAGTTcatcatcttcactctcctcACTCTCTTCAGTAAGATCT

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00052510 False 942 lncRNA 0.42 2 5513 14056
TCONS_00052511 False 265 lncRNA 0.43 2 6199 28338
TCONS_00052512 False 981 lncRNA 0.41 2 27413 132166
TCONS_00052513 True 876 lncRNA 0.42 2 27475 88040

Neighbor

gene id symbol gene type direction distance location
XLOC_024913 FP326649.1 coding downstream 23493 155659 ~ 313530 (+)
XLOC_024914 zgc:174288 coding downstream 108470 240636 ~ 250145 (+)
XLOC_024915 KDELR3 coding downstream 169313 301479 ~ 302222 (+)
XLOC_024916 NA coding downstream 217541 349707 ~ 364317 (+)
XLOC_024917 NA coding downstream 245160 377326 ~ 377609 (+)
XLOC_025429 BX649540.1 misc downstream 30116573 30248739 ~ 30249036 (+)
XLOC_024918 CU394254.3 non-coding downstream 288176 420342 ~ 422738 (+)
XLOC_024921 NA non-coding downstream 340015 472181 ~ 474964 (+)
XLOC_024922 NA non-coding downstream 390492 522658 ~ 523822 (+)

Expression


Co-expression Network