XLOC_024915 (KDELR3)


Basic Information

Item Value
gene id XLOC_024915
gene name KDELR3
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 301479 ~ 302222 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00049455
ATGTCATCTGACCTGTTTGTGTCTCTCtttctccgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatgtgcgcgtgtgtgcgcagGTGGTGTATCTGCTGCTGGCGTACTCCACCGTGGGTCTGATCTTCTTCCGCTTCAGGAACTCGTATGACTCTGAGAGCGACTCTTTCCGTGTGGAGTTCCTGCTGGTGCCGGTGGCCGGACTCTCCTTCCTGGAGAACTACGCCTTTACCCCGCTGGAGattctGTGGACGTTCTCCATCTACCTGGAGTCGGTGGCCATCCTGCCACAGCTCTTCATGATCACTAAGACAGGTGAGGCGGAGTCCATCACGGCACACTACCTGCTGTTCCTGGGCCTGTACCGCGCGCTCTACCTGGCCAACTGGCTCTGGAGGTTCCACACCGAGGGCTTCTACGACCAGATCGCCGTGGTGTCCGGAGTCGTGCAGACCATCTTCTACTGCGACTTCTTCTACCTATACTTCACCAGAGGTcagcgcacacacactcaaagcAACACACACCTGGtacatcacacatacacacacacacacagacataaatatcaaacacactga

Function

symbol description
kdelr3 Predicted to enable KDEL sequence binding activity. Predicted to be involved in endoplasmic reticulum to Golgi vesicle-mediated transport; protein retention in ER lumen; and retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum. Predicted to act upstream of or within protein transport and vesicle-mediated transport. Predicted to be located in Golgi membrane and endoplasmic reticulum membrane. Predicted to be active in cis-Golgi network and endoplasmic reticulum. Predicted to colocalize with COPI-coated vesicle membrane. Is expressed in several structures, including hatching gland; median fin fold; notochord; pectoral fin musculature; and polster. Orthologous to human KDELR3 (KDEL endoplasmic reticulum protein retention receptor 3).

GO:

id name namespace
GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport biological_process
GO:0006890 retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum biological_process
GO:0006621 protein retention in ER lumen biological_process
GO:0016192 vesicle-mediated transport biological_process
GO:0015031 protein transport biological_process
GO:0005783 endoplasmic reticulum cellular_component
GO:0005789 endoplasmic reticulum membrane cellular_component
GO:0005794 Golgi apparatus cellular_component
GO:0005801 cis-Golgi network cellular_component
GO:0000139 Golgi membrane cellular_component
GO:0031410 cytoplasmic vesicle cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0030663 COPI-coated vesicle membrane cellular_component
GO:0005046 KDEL sequence binding molecular_function
GO:0046923 ER retention sequence binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-1387 Predicted to enable KDEL sequence binding activity. Predicted to be involved in endoplasmic reticulum to Golgi vesicle-mediated transport; protein retention in ER lumen; and retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum. Predicted to act upstream of or within protein transport and vesicle-mediated transport. Predicted to be located in Golgi membrane and endoplasmic reticulum membrane. Predicted to be active in cis-Golgi network and endoplasmic reticulum. Predicted to colocalize with COPI-coated vesicle membrane. Is expressed in several structures, including hatching gland; median fin fold; notochord; pectoral fin musculature; and polster. Orthologous to human KDELR3 (KDEL endoplasmic reticulum protein retention receptor 3).

Ensembl:

ensembl_id ENSDARG00000104519

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00049455 True 612 mRNA 0.55 2 301479 302222

Neighbor

gene id symbol gene type direction distance location
XLOC_024914 zgc:174288 coding upstream 51334 240636 ~ 250145 (+)
XLOC_024912 NA coding upstream 154546 99666 ~ 146933 (+)
XLOC_024911 NA coding upstream 169313 5513 ~ 132166 (+)
XLOC_024916 NA coding downstream 47485 349707 ~ 364317 (+)
XLOC_024917 NA coding downstream 75104 377326 ~ 377609 (+)
XLOC_024918 CU394254.3 coding downstream 118120 420342 ~ 422738 (+)
XLOC_024919 si:dkey-167k11.5 coding downstream 128986 431208 ~ 454166 (+)
XLOC_024920 dicp1.1 coding downstream 161905 464127 ~ 630986 (+)
XLOC_025429 BX649540.1 misc downstream 29946517 30248739 ~ 30249036 (+)
XLOC_024921 NA non-coding downstream 169959 472181 ~ 474964 (+)
XLOC_024922 NA non-coding downstream 220436 522658 ~ 523822 (+)

Expression


Co-expression Network