XLOC_025261


Basic Information

Item Value
gene id XLOC_025261
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 20491202 ~ 20509513 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00052638
AAACGTGGCCCCTCTGAGGGCCACGCATGGacttttcccgccacgcttttttttttattttccggcaaagtaaacttagtttaaagtttgcgatcgtgttcgtccgaactgcattacaaactccacgcatcaaggaggacatcaaaaggagttttcatcacgacggaagagagactcgCATACAAAAGAGACCCccagacatgaaagaccagagagagagaggatggaCAGATTGTCAGGGAAAGACGGAAGGAGAGATGCAGACTGGGAGACGCAACTGAAGGAGGAGATGACAGGAGAAGCGGCGGGTGGGAAGATTTGGAGGGGCTGCCACCCTCCGCTGGTCTCGCAGGAACAACACACCGCCACCGACGGCACACCATCAAGCATACTAAACagacagagagtgtgtgtttgtgtggttgtgTACCGTCTCCAGTACACTAATGCTGATGGGACCTGGGGGAGCGGACGGTTGAGTTAAGAGTCAATGATAAA

Function

GO:

id name namespace
GO:0044085 cellular component biogenesis biological_process
GO:0016070 RNA metabolic process biological_process
GO:0016072 rRNA metabolic process biological_process
GO:0022613 ribonucleoprotein complex biogenesis biological_process
GO:0007498 mesoderm development biological_process
GO:0034470 ncRNA processing biological_process
GO:0021571 rhombomere 5 development biological_process
GO:0006364 rRNA processing biological_process
GO:0021572 rhombomere 6 development biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0006396 RNA processing biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:0010467 gene expression biological_process
GO:0042254 ribosome biogenesis biological_process
GO:0000469 cleavage involved in rRNA processing biological_process
GO:0061009 common bile duct development biological_process
GO:0048332 mesoderm morphogenesis biological_process
GO:0003002 regionalization biological_process
GO:0007389 pattern specification process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0044428 obsolete nuclear part cellular_component
GO:0005634 nucleus cellular_component
GO:0031981 nuclear lumen cellular_component
GO:0003676 nucleic acid binding molecular_function
GO:0097159 organic cyclic compound binding molecular_function
GO:1901363 heterocyclic compound binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00052638 True 498 lncRNA 0.51 2 20491202 20509513

Neighbor

gene id symbol gene type direction distance location
XLOC_025260 nxph3 coding upstream 29500 20404912 ~ 20461702 (+)
XLOC_025258 ngfra coding upstream 259421 20156956 ~ 20231781 (+)
XLOC_025259 NA coding upstream 292583 20198302 ~ 20198619 (+)
XLOC_025257 NA coding upstream 426470 20059678 ~ 20064732 (+)
XLOC_025256 tmub2 coding upstream 469606 20012891 ~ 20021596 (+)
XLOC_025262 BX248239.1 coding downstream 170410 20679923 ~ 20680038 (+)
XLOC_025263 BX936284.1 coding downstream 403797 20913310 ~ 20915154 (+)
XLOC_025264 zwi coding downstream 515640 21025153 ~ 21030873 (+)
XLOC_025265 NA coding downstream 548341 21057854 ~ 21066838 (+)
XLOC_025266 NA coding downstream 627582 21137095 ~ 21143371 (+)
XLOC_025429 BX649540.1 misc downstream 9739226 30248739 ~ 30249036 (+)
XLOC_025248 NA non-coding upstream 1018005 19472963 ~ 19473197 (+)
XLOC_025243 BX322663.1 non-coding upstream 1141385 19349719 ~ 19349817 (+)
XLOC_025241 BX322663.3 non-coding upstream 1178095 19312991 ~ 19313107 (+)

Expression


Co-expression Network