XLOC_025324 (zgc:123244)


Basic Information

Item Value
gene id XLOC_025324
gene name zgc:123244
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 24220354 ~ 24226028 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00049985
AACCTGTAAATGACTTTCAATTGAATCAGTTTGGCCTGTTCTCGTCGTTTTTTCACTCAATAACAGGATTATTTGTCCACAGGTGCTCCAGCTCGATTCGTCCCATGGTGATCTGATTGGTTCATCATGTGGGCATGGGCATTGCTTCCTGTCTTTCTGGCAGTCTTTGGGACTGTTGGCCTTTGGGCTGTGTATGCCATAGCAGTTTCTAATAACTCTGTTAATATAACTATAGAGTTCCCTTACATCAGCACATGTGGTGCATACACCCCCCAGAGCTGCCTGTTTGCTCAGATATGCAACATTTGCTGTGTGTTAGctCTGTGGATTGTCGTGATCAGATTTCAGCAGATCCGTGATTTGGGCCGTTCATCTCATTTAAACACAGCTGGTCTGGTGCTTGGCTTCATCTCTAGCATTGGGATTTCTATTCTAGGAAACTTTCAGCAAACCATAATCCAAGAGGTTCATCTGCTTGGAGCACTCATGGCCTTCTTTCTGGGTTTAGCATACTTTTGGATCCAGGCCTTTATTACATATTTCAGCCCTCCATCACGTGACAATAAGTGGTTGGTTCCAGTGCGGTTCATCCTCTGCAGCCAGTGTACTTGTATGGTCATCTGCATGTTTGTCCTCCACAGCACAGGGTTTCGCTCTGCAGCTGCTATATGCGAGTGGATTCTGGTCATGTGTTTTTTTGCGCTGTTTGGGGTTTTTGCAGCAGAGTTCAGACACATTGACTTCCACAAGCTCACTGTACAAAAGGAGGGATTAAAAGTtgctaataatgataatgttGTGTGGACAGTACAGGACGTTCAGTGAAGAAGAGCTGGCAAGTTTTGGCTTTGGTAAttggaaacatacacacactcacacaagaaACAAAGTGTTATGACATTGAACTGTAACCTGCATGACTTTGCTAAATTCATAATTACAAACAACACTCCAATTTTATACCATATTACATAAACAAATCAGTTATATGAGAATCTTGCACTAAATTcttgtgtatatttttatattgttgtatTGATATGTTCCTTCAAAAGTTAGAATGGTATATAATGTTGAGAGAATGagacattttttgttttagctgtgtTGTATTGTATTTGGTTGTACAACAAACTAACCTCATCCTGGAGTTATTTTGTAGCCTTAATGATTTGTTTGCATGATGTCATTAAATATATTGTTCAAAGTG

Function

symbol description
zgc:123244 Predicted to act upstream of or within autophagy. Predicted to be located in autophagosome membrane; endosome membrane; and plasma membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Orthologous to human TMEM150B (transmembrane protein 150B).

GO:

id name namespace
GO:0006914 autophagy biological_process
GO:0010506 regulation of autophagy biological_process
GO:0005764 lysosome cellular_component
GO:0005768 endosome cellular_component
GO:0000421 autophagosome membrane cellular_component
GO:0005886 plasma membrane cellular_component
GO:0005887 integral component of plasma membrane cellular_component
GO:0031410 cytoplasmic vesicle cellular_component
GO:0010008 endosome membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-051113-144 Predicted to act upstream of or within autophagy. Predicted to be located in autophagosome membrane; endosome membrane; and plasma membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Orthologous to human TMEM150B (transmembrane protein 150B).

Ensembl:

ensembl_id ENSDARG00000056144

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00049985 True 1210 mRNA 0.40 7 24220354 24226028

Neighbor

gene id symbol gene type direction distance location
XLOC_025322 adsl coding upstream 1732 24207243 ~ 24218622 (+)
XLOC_025323 NA coding upstream 2843 24217188 ~ 24217511 (+)
XLOC_025321 atf4b coding upstream 19535 24197934 ~ 24200819 (+)
XLOC_025320 prr15la coding upstream 23084 24189804 ~ 24197270 (+)
XLOC_025319 CR790362.1 coding upstream 35928 24161869 ~ 24184426 (+)
XLOC_025325 pdgfbb coding downstream 49569 24275597 ~ 24297419 (+)
XLOC_025326 pvalb6 coding downstream 71454 24297482 ~ 24434905 (+)
XLOC_025327 NA coding downstream 212569 24438597 ~ 24452013 (+)
XLOC_025328 cbx6b coding downstream 232176 24458204 ~ 24464794 (+)
XLOC_025329 nptxra coding downstream 256971 24482999 ~ 24501796 (+)
XLOC_025429 BX649540.1 misc downstream 6022711 30248739 ~ 30249036 (+)
XLOC_025317 NA non-coding upstream 86869 24121201 ~ 24133485 (+)
XLOC_025316 dre-mir-152 non-coding upstream 124318 24095957 ~ 24096036 (+)
XLOC_025313 NA non-coding upstream 252388 23930446 ~ 23967966 (+)
XLOC_025342 NA non-coding downstream 704552 24930580 ~ 24936255 (+)
XLOC_025344 CR936416.1 non-coding downstream 829948 25055976 ~ 25060120 (+)
XLOC_025351 NA non-coding downstream 1082682 25308710 ~ 25308964 (+)
XLOC_025353 NA non-coding downstream 1346750 25572778 ~ 25573533 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000034_01286141_01289408 NA coding CI01000034 null 1285074 ~ 1289408 (-)