XLOC_025397 (eci1)


Basic Information

Item Value
gene id XLOC_025397
gene name eci1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 27770110 ~ 27777671 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00050103
CTTTTAAGATCTGGCAACACGCGCACACAGACGCAGAACGAAAGTTTGCATTTAGCAACAGCGATATATCTGCAGCTTTCGAAATGTCGGTTTTAAGGGGCTGCACCAAGTTCACCCATCCTGGATTTCTATCACTGCTCTCTGGAAACAGCAGTCATGGTAGAAGTTGTGCTCTTCGGTATCTTGTGTCAAAAAACGATTATTCAACATCTTCCAAGATTAAAGTGGACCTGGACAGTAGTAACGGCGTTGCTGTACTGCAGTTCCAAAGTCCTCCAGTCAACAGTCTCAGTCTCGACTTTTTGACTGAGTTTGCTATTAATTTGGAAAAACTTGAGCTGGACAGAAGCTGCAGGGGTGTGATCATAACATCTGCTCAGCCAAAGGTGTTTTCTGCAGGCCTTGATATTTTGGAAATGTATCAAAAGAGTCCAGAGCACTGCGCTGAATTCTGGAAGGCCGTCCAGGAGGCATGGCTGAAGCTTTATGGGTCCTCTAAGGTCACCATCGCTGCTATCAATggTAACAGTCCTGCTGGTGGCTGTTTGTTGGCCATGTGTTGTGACTACAGGATCATGGCTGATAACCCTCGCTATAGCATTGGTCTCAATGAAACACAACTTGGCATAGTTGCACCCTTTTGGTTTAAGGACACCATGTTAAACGTTGTGGGCCATAGAGAAACTGAGAAGGGTCTTCAGCTGGGTTTACTGTACAATACTCCAAACGCCCTGAAGATTGGTCTGGTGGATGAGCTTGTTCCTGAGGATAAAGTTCTCAGCACGGCAGCTGAGACCATGACTAAATGGTTGGCCATTCCAGATCACGCTCGTCAGATAAGCAAGTCTATGATGAGAAAACCCACAGTAGACAAACTTCTTGCAAATAGAGAAGCCGACACCACAAACTTTGTCAGTTTCATCACCAAAGACTCCATCCAGAAATCTCTTGGCATGTACATGGCGATGCTGAAGAAGAAGAAGTCCTAAGGACCTGAACATGTGCCTGTTGTTGATGTTGCCTTATATGTAGTATAGGAGCGTCAATGGATAACACATTATCCTTTTTGTTTGTTGCTGGAGGATTACTTTATTtgtttgtactgtaaataaaaacttttaaaacaaaaaa

Function

symbol description
eci1 Predicted to enable enoyl-CoA hydratase activity. Predicted to be involved in fatty acid beta-oxidation. Predicted to be active in mitochondrion. Orthologous to human ECI1 (enoyl-CoA delta isomerase 1).

GO:

id name namespace
GO:0006635 fatty acid beta-oxidation biological_process
GO:0005739 mitochondrion cellular_component
GO:0004300 enoyl-CoA hydratase activity molecular_function
GO:0003824 catalytic activity molecular_function

KEGG:

id description
ko00071 Fatty acid degradation

ZFIN:

id description
ZDB-GENE-030131-6033 Predicted to enable enoyl-CoA hydratase activity. Predicted to be involved in fatty acid beta-oxidation. Predicted to be active in mitochondrion. Orthologous to human ECI1 (enoyl-CoA delta isomerase 1).

Ensembl:

ensembl_id ENSDARG00000018002

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00050103 True 1131 mRNA 0.44 7 27770110 27777671

Neighbor

gene id symbol gene type direction distance location
XLOC_025396 arhgdig coding upstream 878 27713610 ~ 27769232 (+)
XLOC_025395 clcn7 coding upstream 60798 27664864 ~ 27709312 (+)
XLOC_025394 usp7 coding upstream 106663 27606505 ~ 27663447 (+)
XLOC_025393 NA coding upstream 168637 27594373 ~ 27601473 (+)
XLOC_025391 NA coding upstream 275305 27346839 ~ 27494805 (+)
XLOC_025398 nat15 coding downstream 8930 27786601 ~ 27796351 (+)
XLOC_025399 carhsp1 coding downstream 20423 27798094 ~ 27831815 (+)
XLOC_025400 TMEM114 coding downstream 151834 27929505 ~ 27952302 (+)
XLOC_025401 sept12 coding downstream 724748 28502419 ~ 28627447 (+)
XLOC_025402 NA coding downstream 872276 28649947 ~ 28733765 (+)
XLOC_025429 BX649540.1 misc downstream 2471068 30248739 ~ 30249036 (+)
XLOC_025392 BX000529.1 non-coding upstream 362899 27407096 ~ 27407211 (+)
XLOC_025390 NA non-coding upstream 426421 27294308 ~ 27343689 (+)
XLOC_025384 NA non-coding upstream 1133712 26635820 ~ 26636398 (+)
XLOC_025403 NA non-coding downstream 988022 28765693 ~ 28783757 (+)
XLOC_025406 NA non-coding downstream 1121458 28899129 ~ 28926075 (+)
XLOC_025410 BX005369.1 non-coding downstream 1389349 29167020 ~ 29167147 (+)
XLOC_025411 NA non-coding downstream 1615794 29393465 ~ 29398151 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000069_01020120_01022182 ECI1 coding CI01000069 null 1020120 ~ 1022291 (+)