CI01000069_01020120_01022182 (ECI1)


Basic Information

Item Value
gene id CI01000069_01020120_01022182
gene name ECI1
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000069
NCBI id null
chromosome length 5329268
location 1020120 ~ 1022291 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000069_01020120_01022182.mRNA
ATGTCATCAGTATTAAGACGCTGTACCAAATTCACCCCCTCTGGATTTGTATCACTGCTGTCTGGAAACTGCAGTTATGGGAGAACCTGTGCTCTGCAATACTTTGTATCTTCAAACAAATATTCATCATCCTCAAAAATTAAAGTGGACCTGGATAGCAGTAATGGTGTTGCTATAATGCAGTTCCAAAGTCCTCCGGTCAACAGCCTCAGTCTTGACTTTTTGACTGAGTTTGCTATTAATTTGGAAAAACTTGAGCTGGACAGAGGCTGCAGAGGTGTGATCATAACATCTGCCCAGCCGAAGGTGTTTTCTGCAGGCCTAGATATTTTGGAAATGTATCAGAAGAACCCAGAGCACTACGCAGAATTTTGGAAGGCTGTACAGGACGCATGGCTTAAGCTTTATGGGTCCACCAAGGTCACAATTGCCGCAATCAATGGCTCCAGTCCTGCAGGTGGCTGTTTGTTGGCTTTGTGTTGTGACTACAGGATCATGGCTGATAACCCTCGCTATAGCATTGGTCTGAATGAAACTCAACTTGGTATAGTTGCACCTTTTTGGTTTAAGGACACCATGTTAAACGTTGTGGGCCATAGAGAAACCGAGAAGGGTCTTCAGCTCGGTTTACTGTACAGTACTCCTGAAGCCCTGAAGGTCGGTCTGGTGGATGAGCTTGTTCCTGAGGATAAAGTTCTCAGCAAAGCTACTGAGACCATGACTAAATGGTTGGCCATCCCAGATCATGCCCGTCAGATAAGTAAGTCCATGATGAGAAAACCCACCATAGACAAACTTCTTGCGAACAGAGAAGCCGACATCACAAACTTCGTCAGTTTCACCACCAAAGACTCCATCCAGAAGTCTCTTGGGGTGTACATGCAGATGCTGAAGAAGAGGAAGTCTTGAGGAGCAGAACATGTGCCTGTTGTTGACATTGCCTTTATGTAGCACATCAGTGTCACTGCGTATCACATTGTCCTCTCTTTTGTTACCAGAGGATAACTTTTGTTTGTAA

Function

symbol description
eci1 Predicted to enable enoyl-CoA hydratase activity. Predicted to be involved in fatty acid beta-oxidation. Predicted to be active in mitochondrion. Orthologous to human ECI1 (enoyl-CoA delta isomerase 1).

GO:

id name namespace
GO:0004165 dodecenoyl-CoA delta-isomerase activity molecular_function

KEGG:

id description
K13238 ECI1, DCI; Delta3-Delta2-enoyl-CoA isomerase

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000069_01020120_01022182.mRNA True 1018 mRNA 0.45 7 1020120 1022291

Neighbor

gene id symbol gene type direction distance location
CI01000069_00994148_01017851 ARHGDIG, GDIR2, ARHGDIB coding upstream 1386 993452 ~ 1018734 (+)
CI01000069_00966300_00979227 CLCN7 coding upstream 39600 966300 ~ 980520 (+)
CI01000069_00962392_00964350 NA coding upstream 55621 959810 ~ 964499 (+)
CI01000069_00932460_00950854 USP7.S, USP7 coding upstream 68673 932310 ~ 951447 (+)
CI01000069_00925578_00927804 NA coding upstream 92301 925319 ~ 927819 (+)
CI01000069_01027083_01031960 NAT15, NAA60 coding downstream 4792 1027083 ~ 1032781 (+)
CI01000069_01047561_01050241 NA coding downstream 25204 1047495 ~ 1050340 (+)
CI01000069_01099046_01114142 TMEM114 coding downstream 76755 1099046 ~ 1114404 (+)
CI01000069_01340581_01345512 NA coding downstream 317877 1340168 ~ 1345955 (+)
CI01000069_01454390_01514188 SEPT12 coding downstream 432099 1454390 ~ 1514188 (+)
G273761 NA non-coding upstream 95714 922448 ~ 924406 (+)
G273459 NA non-coding upstream 258349 761569 ~ 761771 (+)
G273456 NA non-coding upstream 262878 757005 ~ 757242 (+)
G273408 NA non-coding upstream 515000 504865 ~ 505120 (+)
G273770 NA non-coding downstream 879 1023170 ~ 1023898 (+)
G273827 NA non-coding downstream 62441 1084732 ~ 1084941 (+)
G273850 NA non-coding downstream 97085 1119376 ~ 1120080 (+)
G273848 NA non-coding downstream 126173 1148464 ~ 1178111 (+)
G273955 NA non-coding downstream 324086 1346377 ~ 1346723 (+)
G273359 NA other upstream 541039 477727 ~ 479081 (+)
CI01000069_02033431_02040119 EIF3D.S, EIF3D other downstream 1011109 2031954 ~ 2040427 (+)
G274270 NA other downstream 1650333 2672624 ~ 2681158 (+)
CI01000069_02894136_02894807 COX6A2 other downstream 1870555 2893418 ~ 2894947 (+)
G274603 NA other downstream 2777732 3800023 ~ 3803501 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_025397 eci1 coding NC_007114.7 CM002887.2 27770110 ~ 27777671 (+)