CI01000069_00932460_00950854 (USP7.S, USP7)


Basic Information

Item Value
gene id CI01000069_00932460_00950854
gene name USP7.S, USP7
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000069
NCBI id null
chromosome length 5329268
location 932310 ~ 951447 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000069_00932460_00950854.mRNA
GCATAAAATGGGCTGGTGCTTTTTGCGTTAGCATTACAGTTGACAAGGGAATTTCCATTTTGTCTTTTTTTTTTTTTTTTTTTTTCAGCTGGGGACCCAGATGATCCTCCAAGAATTCCCCAAAATCCAGTCATCAATGGGAACGTGGCTATGGCTGACGGACACAACAACACAGAGGAGGACATGGAGGATGACACAAGCTGGCGCTCTGAAGCAACTTTCCGTTTTGTGGTGGAGCGCTTTAGCAGGCTGAGTGAGTCTGTGCTCAGCCCACCCTGCTTCGTGAGAAATCTTCCCTGGAAGATCATGGTGATGCCCCGGTTTTACCCAGACAGACCTCACCAGAAGAGCGTTGGATTCTTCCTTCAGTGCAATGCTGAGTCAGACTCTACGTCCTGGTCATGCCATGCTCAAGCCATGCTCAAAATAATCAACTACAAAGATGATGAGAAATCCTTCAGCCGCCGCATTAGTCACCTGTTCTTCCACAAGGAAAATGACTGGGGCTTTTCCAACTTCATGTCATGGAGTGATGTGACTGATCCAGAGCGGGGCTTTGTAGAGGATGATAAGGTCACTTTTGAGGTCTATGTTCAAGCTGACGCACCTCACGGTGTGGCCTGGGATTCAAAGAAACACACTGGTTACGTGGGGTTGAAGAATCAAGGTGCCACATGTTACATGAACAGCTTACTACAGACTCTCTTCTTCACAAACCAGCTCCGGCGGGCGGTTTATATGATGCCCACTGAGGGAGATGATTCCTCTAAAAGCGTTCCCCTCGCCCTGCAGAGGGTGTTCTATGAGCTCCAGCACAGCGATAAACCTGTTGGGACAAAGAAGCTGACTAAGTCTTTTGGATGGGAGACTCTAGACAGTTTCATGCAGCATGATGTACAGGAACTGTGCAGAGTGTTGTTGGACAATGTAGAGAACAAGATGAAAGGAACATGTGTGGAGGGTACAATCCCAAAGCTCTTCCGAGGAAAGATGGTGTCCTACATCCAGTGTAAGCATGTGGACTATCGGTCAGAAAGAATAGAGGATTACTATGACATCCAGCTCAGCATAAAAGGAAAGAAAAACATCTTTGAGTCATTCAAGGATTATGTGGCTGTGGAACAGCTGGATGGGGATAACAAATACGATGCAGGCGAGCATGGTCTACAGGAGGCAGAGAAGGGTGTAAAGTTCCTGACCTTCCCTCCTATTCTGCACCTACAGCTCATGAGGTTCATGTACGATCCTCAGACTGACCAAAATATTAAGATAAATGACAGGTTTGAATTCCCAGAGCAATTACCTCTGGATGAGTTTCTGCAGAAGCCAGACGTGAAAGACCCAGCCAACTACATTCTCCACGCCGTGTTGGTGCACAGCGGAGACAACCACGGGGGCCACTACGTCGTCTACCTTAATCCTAAAGGAGACGGCAAAACCCGTAGCTTCATAGGCAGCATTCCAACTTACAGCATGGCAATGCTTCAGGCTACCGAGTTCAAGTTCAGGCTTGTCCATTCCCCTTTCTTCTCTCTTGTCGTTTCCTTGTCGTTCTCCTCCCTTGTCATTTCCTCCTGTCCCCCCCAGTGCCACAGTTTTCATGTTAGTCTGGAGCCCTGCATTGTATTTGTTTGTGTTTGTTTTTGTTTTTTAGCTGTAGTGTTTAGTCTGTGGTGTAAATTTGACGATGATGTCGTTTCTCGGTGCACTAAAGAAGAGGCTATCGAGCACAATTACGGTGGTCACGATGATGACTTGTCAGTGCGTCACTGCACTAACGCTTACATGTTGGTGTACATCAGAGAGTCCAAGCTCAGTGAGGTCCTGCAGCCGGTCACAGACATGGATATCCCCCAGCAGCTGGTGGAGAGGCTGCAGGAGGAGAAGAGGGTGGAAGCTCAGAAGAGAAAAGAGAGGCAGGAGGCTCACCTTTACATGCAAGTACAGATGGTGACAGAAGACCAGTTCTGTGGACATCAGGGCAATGACATGTATGATGAGGAGAAAGTAAAATACACAGTGTTCAAAGTTCTGAAAAGCTCCACTCTGGCTGAGTTTGTCCAGAACCTTTCACAGACCATGGGTTTTCCACAGGACCAGATGAGACTGTGGCCAATGCAGGCCAGAAGCAATGGCACTAAACGGCCGGCCATGTTGGATTATGAAGCAGATTGCAACAAGTCTATGATCGACTTGAGCGATAACGAGAACCCATGGACAATATTTCTAGAAACTGTAGATCCAGAAATGGCTGCCAGTGGTGCAACGTTACCCAAGTTCGACAAAGACCATGATGTTATGTTGTTCTTGAAGATGTATGATCCAAAAACCAGAAGCTTAAATTATTGTGGACATATCTACACGCCTATATCCTGTAAAATACGAGACTTGCTGCCCGTTATGTGTGAAAGAGCAGGGTTTCAGCAGGGAACTAGCCTTATCCTCTATGAGGAAGTTAAACCGAATTTAACAGAGCGAATACAAGACTATGATGTCTCCCTGGACAAGGCTCTGGATGAGCTTATGGATGGAGACATAATTGTGTTCCAGAAGGATGATCCTGAAAATGAAACCAGTGAGCTGCCTACTGCAAAAGACTACTTCAGAGACTTGTACCACCGTGTGGATGTCATCTTCTGTGACAAGACCATTCACAATGACCCAGGCTTTGTTGTGACACTGTCAAACCGAATGAACTACTTTCAGGTGGCAAAGACTGTTGCGCAGAGGTTAAATACTGACCCCATGCTCCTACAGTTCTTTAAGTCACAGGGATACAGAGACGGTCCAGGCAACCCACTCAGGCACAACTATGAAGGCACTCTCAGAGACCTACTGCAGTTCTTCAAGCCCCGGCAGCCTAAGAAGCTCTACTACCAGCAGCTCAAGATGAAGATCACAGACTTTGAGAACAGGAGGAGTTTCAAAGCCATATGGCTCAACAGTATGTTTCGAGAGGAGGAGATCACACTATACCCTGACAAGCATGGCTGTGTTCGGGACCTTCTGGAGGAATGTAAAAAGGCAGTGGAGCTCTCAGACAAAGGCTCAGAGAAGCTGAGGCTGTTAGAAATTGTCAGCTACAAAATTATTGGGGTTCACCAGGAAGATGAATTGCTAGAATGTTTATCTCCAGCAGCCAGTCGAACATTCAGAATAGAGGAAATCCCTCTCGACCAGGTTGACTTGGACAAGGAGAATGAAATGCTGATTCCAGTTGCACATTTCCACAAGGAAGTCTTCGGGACATTCGGAATTCCGTTTTTGCTCAAGATCCGTCAGGGGGAACCCTTCCGAGAAGTGATGAAAAGAATTCAGAGCATGCTTGACATTCAGGAGAAAGAGTTTGAGAAGTTCAAGTTTGCAATAGTCATGATGGGCCGGCATCAGTATATCAACGAGGAAGACTACGAGGTGAATCTGAAAGACTTTGAGCCACAGCCAGGGAACATGTCGCACCCGAGGCCTTGGTTAGGGCTCGACCACTTCAACAAAGCTCCAAAGAGAGGTCGCTACACGTACCTGGAAAAAGCGATCAAGATTCACAACTGACAAGCCCCCACTCTAACCGACGATACTAAAGACTTTAACCAAACCTCTTGTGTGCACCACTTTTAACACCTGCTGTCTGGGTACACAGGCACCATGTATGAAGTCTTCAGCGAATGGAGTGACTGCTGATGCTCCTGTTTTTCTTTTGAGGCTGTTCGATTTGGCTTCTCTAACTATTGACTGCCTATTTGTCTGGAAGAATGAATTGGATTTTAAGAAGAAAGGGGGAACAGTATGTCCTAGACTTTTGTTTTGATTTTTATTTTGTGTTTTGTTTTTGTTTGTTTTTCTTTTGTTTTTCTTTTTAAGTTCGTTTTTAAAAGAATTGTTACGGCAAGAAAGCTGCTGCATTGTGAGGTGGAGGCGATGGAAAGAGGAGTTATGTCATTTGCAGAAGATGAAAAGGATACCTCCATCCTTCAACAAAAAATAATCACCGCAAATGGCTGAGGCTTTTGCTAGTTGCCCTGACATGGTTGTCTCATTTTCTGGTTCCTTAGTGCAACTAGTCAATTTTCATGTTTACACAATTCTTCTTTCTCACTTAGTTTGGTTGGAGAAATTCAGTTTGTCGTCTTTGGAAATCCTGTATA

Function

symbol description
usp7 Predicted to enable cysteine-type endopeptidase activity and thiol-dependent deubiquitinase. Acts upstream of or within cranial skeletal system development. Predicted to be active in cytosol and nucleus. Orthologous to human USP7 (ubiquitin specific peptidase 7).

GO:

id name namespace
GO:0006511 ubiquitin-dependent protein catabolic process biological_process

KEGG:

id description
K11838 USP7, UBP15; ubiquitin carboxyl-terminal hydrolase 7

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000069_00932460_00950854.mRNA True 4145 mRNA 0.46 31 932310 951447

Neighbor

gene id symbol gene type direction distance location
CI01000069_00925578_00927804 NA coding upstream 4491 925319 ~ 927819 (+)
CI01000069_00910238_00919183 NA coding upstream 12607 909886 ~ 919703 (+)
CI01000069_00743257_00745220 NA coding upstream 186239 743182 ~ 746071 (+)
CI01000069_00596413_00741443 GRIN2A coding upstream 190867 596413 ~ 741443 (+)
CI01000069_00575065_00578555 EMP2 coding upstream 353667 575065 ~ 578643 (+)
CI01000069_00962392_00964350 NA coding downstream 9365 959810 ~ 964499 (+)
CI01000069_00966300_00979227 CLCN7 coding downstream 14853 966300 ~ 980520 (+)
CI01000069_00994148_01017851 ARHGDIG, GDIR2, ARHGDIB coding downstream 42005 993452 ~ 1018734 (+)
CI01000069_01020120_01022182 ECI1 coding downstream 68673 1020120 ~ 1022291 (+)
CI01000069_01027083_01031960 NAT15, NAA60 coding downstream 75636 1027083 ~ 1032781 (+)
G273761 NA non-coding upstream 7904 922448 ~ 924406 (+)
G273459 NA non-coding upstream 170539 761569 ~ 761771 (+)
G273456 NA non-coding upstream 175068 757005 ~ 757242 (+)
G273408 NA non-coding upstream 427190 504865 ~ 505120 (+)
G273407 NA non-coding upstream 428164 503646 ~ 504146 (+)
G273770 NA non-coding downstream 71723 1023170 ~ 1023898 (+)
G273827 NA non-coding downstream 133285 1084732 ~ 1084941 (+)
G273850 NA non-coding downstream 167929 1119376 ~ 1120080 (+)
G273848 NA non-coding downstream 197017 1148464 ~ 1178111 (+)
G273359 NA other upstream 453229 477727 ~ 479081 (+)
CI01000069_02033431_02040119 EIF3D.S, EIF3D other downstream 1081953 2031954 ~ 2040427 (+)
G274270 NA other downstream 1721177 2672624 ~ 2681158 (+)
CI01000069_02894136_02894807 COX6A2 other downstream 1941399 2893418 ~ 2894947 (+)
G274603 NA other downstream 2848576 3800023 ~ 3803501 (+)

Expression


Co-expression Network