G273770


Basic Information

Item Value
gene id G273770
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000069
NCBI id null
chromosome length 5329268
location 1023170 ~ 1023898 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU310640
CTCATGATGACTTGAGTGAATTTTTAATCAACTGTTGCCTTTACTAGCTCATTTTAAATGGTCTTGTGGACAAATTGTTTTTTTAAAACTGCAAATGCAAACATTCACTTATGCATTCGCTACAGCTATAGTGTGATATTGTACAATTATTCGTTAAAGCAAATGATTTCTTTTTATTCTCACCAAGTGTTACAAGCAGTGTATATCTGCTGTGAGGGAACAACCTTGATGTTTTTCACATGAGCTTGACCTCAACTGGAAAGTGATCGCTCACTGCCAGGCCCTGTGAGAGAGACATGAACACTTCAGACAGATGAATACACTCAGCAATAACTCAGTCTCTAGAGAGATCCTTCGGTTTAATGTTATAATCCCAATGGGGCAAAATCTGTCCTCACCCAGCTCTGGCTCAATCCATGGGCTTCCATGAAGTCAAAGACCTGTGCTGATCCAGGGGACACTCCTTTCATCATGTCAGAGGTGACCACAATCCTGGGCAGTGTGTGTTTGTGACGGTTGTATCCGCACTGTCAGGGATGAGCCAGGTGTAACTTTGGTCAGTGCGGAGTCGTATTTTTGACCAATTCGAATTTGACACGTAGCTACAGCCAGCATTGAAGTCTCCCAAAAGCATGATGTTCT

Function

NR:

description
parathyroid hormone 2 receptor-like isoform X2

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU310640 True 642 lncRNA 0.42 2 1023170 1023898

Neighbor

gene id symbol gene type direction distance location
CI01000069_01020120_01022182 ECI1 coding upstream 879 1020120 ~ 1022291 (+)
CI01000069_00994148_01017851 ARHGDIG, GDIR2, ARHGDIB coding upstream 4436 993452 ~ 1018734 (+)
CI01000069_00966300_00979227 CLCN7 coding upstream 42650 966300 ~ 980520 (+)
CI01000069_00962392_00964350 NA coding upstream 58671 959810 ~ 964499 (+)
CI01000069_00932460_00950854 USP7.S, USP7 coding upstream 71723 932310 ~ 951447 (+)
CI01000069_01027083_01031960 NAT15, NAA60 coding downstream 3185 1027083 ~ 1032781 (+)
CI01000069_01047561_01050241 NA coding downstream 23597 1047495 ~ 1050340 (+)
CI01000069_01099046_01114142 TMEM114 coding downstream 75148 1099046 ~ 1114404 (+)
CI01000069_01340581_01345512 NA coding downstream 316270 1340168 ~ 1345955 (+)
CI01000069_01454390_01514188 SEPT12 coding downstream 430492 1454390 ~ 1514188 (+)
G273761 NA non-coding upstream 98764 922448 ~ 924406 (+)
G273459 NA non-coding upstream 261399 761569 ~ 761771 (+)
G273456 NA non-coding upstream 265928 757005 ~ 757242 (+)
G273408 NA non-coding upstream 518050 504865 ~ 505120 (+)
G273827 NA non-coding downstream 60834 1084732 ~ 1084941 (+)
G273850 NA non-coding downstream 95478 1119376 ~ 1120080 (+)
G273848 NA non-coding downstream 124566 1148464 ~ 1178111 (+)
G273955 NA non-coding downstream 322479 1346377 ~ 1346723 (+)
G274005 NA non-coding downstream 390106 1414004 ~ 1414380 (+)
G273359 NA other upstream 544089 477727 ~ 479081 (+)
CI01000069_02033431_02040119 EIF3D.S, EIF3D other downstream 1009502 2031954 ~ 2040427 (+)
G274270 NA other downstream 1648726 2672624 ~ 2681158 (+)
CI01000069_02894136_02894807 COX6A2 other downstream 1868948 2893418 ~ 2894947 (+)
G274603 NA other downstream 2776125 3800023 ~ 3803501 (+)

Expression


Co-expression Network