CI01000069_00966300_00979227 (CLCN7)


Basic Information

Item Value
gene id CI01000069_00966300_00979227
gene name CLCN7
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000069
NCBI id null
chromosome length 5329268
location 966300 ~ 980520 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000069_00966300_00979227.mRNA
TTATCTGGGGGAGGTATGTTTCATATAGGCAGGCTGAGCACTGTGGACCTTGAGGAGGAAATCACACCTGAAGAGGACATTGTGAGAAGTCGACCGAAGGAAATCCCTCACAACGAAAAGCTGCTGTCCCTCAAATTTGAGAGTCTTGATTATGATAATAGCGAGAATCAGTTGTTCCTGGAGGAAGAGAGACGGATGAGTCACATGGTCAGTATAGCCACCAGAGATTTTCTTATAGAGGTGGAGATGTCAAACTCTGGGTCTGTGTCTTTGGAAAAAATTATAACGGTTAACTTGGATCATGTGCATCTTAGTTTCAGATGTCTGGAGATCAATCGATGGGTGATCTGTGGTCTGATTGGGTTCTTCACTGGTCTCATCGCATGCATGATAGACATTGCTGTGGAACGTCTTGCTGGGTACAAGTACTTTGCAGTCAAACAGAGTATCCTTTTTCTAGTTTCTTTAACCAGATGTTCAGACATTGAGAAGTTCACAGAGTTCGGAGGCCTGTCCATCTCTCTTATACTGTGGGCAGTGCTGAACTCTGCTTTTGTGATGCCCATTGCTGCAGGAAGTGGAATCCCTCAGATAAAATGCTACCTGAATGGAGTGAAGATCCCTCGTGTTGTTCGACTAAAGACTCTGGTGGTAAAGGTCTTTGGTGTGATCTGCTCAGTTGCTGGAGGTCTTGCCGTTGGAAAGGAAGGGCCCATGATTCACTCAGGAGCAGTGGTGGCCGCAGGAGTATCTCAAGGCAGAAGCACTTCACTGAAAAAAGATTTTAAGATGTTTGAGTATTTCCGCCGGGACACAGAGAAGAGAGACTTTGTCTCTGCAGGAGCAGCGGCTGGAGTCTCTGCTGCTTTTGGAGCCCCTGTTGGTGGGGTTCTGTTCAGTTTAGAGGAAGGCGCATCTTTCTGGAACCAAATGTTGACTTGGAGAATTTTCTTTGCTTCGATGGTCTCCAGCTTCACACTGAACTTTTTCCTGAGTATTTACCATGAGAAGCCTGGAGACCTCTCCAGCCCTGGTCTCATTAACTTTGGCAGATTTGACACTGATGTAATGGAGGCTATGCTGGTTGCGGCGGTGACCGCTACAGTTTCTTTTGCTATGATCTATTTCTCCAATGACTGCAAGCCATTGGGACAGGACCACACTGAGGAATATCCTCTGCAGCTCTTCTGTGCTGATGGTGAATATAATTCCATGGCCACTGCCTTCTTCAACACACCTGAGCGGAGTGTAAGGAGTCTGTTCCACAACCCTCCAGGAACTTACAACCCTGTGACTTTGGGAGTCTTCGCTCTGGCCTATTTCCTCCTAGCTGTCTGGACGTATGGTCTGACCGTGTCAGCAGGAGTTTTCATCCCCTCTCTGCTCATTGGAGCAGCCTGGGGGCGACTCTTTGGGATCCTTATGTCTGTCATCGCTCGCAGCTCATCAATTTCGGCGAATCCTGGAAAATATGCTCTGATAGGTGCTGCGGCCCAGCTTGGTGGCATTGTCAGAATGACCCTCAGTCTCACGGTAATCCTGGTAGAAGCCACAGGGAACGTGACCTATGGCTTTCCCATCATGCTTGTGCTGATGACTGCCAAAATTGTGGGGGATTACTTTGTAGAGGGCCTGTATGACATCCATATTAAGCTGCAGAGTGTTCCTTTCCTCCACTGGGAGGCTCCTGCTACTTCTCATTGGCTGACGGCCAGGGAGGTCATGAGCTCTCCAGTCACCTGCTTTAACAGAGTGGAGAAGGTCGGAACGATTGTGGACGTTCTTAGCAACACATCCACCAATCACAATGGCTTCCCAGTGGTCACCCACACTACTGTGCACGATGAGCCGGGCAAAATCTGTGGACTTATTCTCCGCTCTCAGCTTATTGTTCTTCTCAAGCATAAGGTGTTTGTGGAGAGGGCGTCTTCACGTCTCATCCAAAGGAAGCTACAGCTGAAGGACTTCAGAGATGCATATCCACGTTTCCCCCCTATCCAGTCCATCCACGTCTCTCAGGACGAGAGGGAATGCATGATGGACCTCACTGAGTTCATGAACCCGACCCCTTATACTGTGCCTCAGGAGACTTCACTCCCTCGTGTGTTTAAATTGTTTCGGGCGCTGGGACTGAGACATCTGGTGGTGGTTGATAATGAGAACAGGGTTGTGGGGCTGGTAACCAGGAAGGATCTTGCACGCTACCACATGGGTAAAGATGGCCTGGAGGAGCTTCACCTGGCTCAAATGTGATTGGTCCACAAGTTCATCCTGGACCCTGCCTTCAGAGCACCAGCTTTGGACCGTAATAACTCAGGGGCTGGTCAGAGTCAAAGATGCCAAACACAAACCCGCAACATGCACAATTTGTCCGACATTCAGTATTTTAAGGGCTCGATTATTTGAAGAATACATTTTTGCTCCTTTATCACAAAGTCAGTTATGCGTTGATTTTTGCCTGTGGAAATACAGGGAATGAGCACATTATGTTAGTACGTAATGTTAGTTTTGCACTATGTGACTATTTATTACATTTATAATATTTTAGAGTAGATAAGCTTTTCGGGAGCCCTAACTCTCCAAAAGCATCATTTTGTGTCACCTTACATGTTTGTCATGGCTAGTTACCATTTGAGACATGTACATCAATGTTTATTGTCATGCCAATGATAATTTATATCGACATGACAATGTATGCATTTTTGCAGTCACAACAATTCCTACACAATATAAATTGTGAATACTTACTTGCTAATGCTTAAAGATAGTTCTAGTAAAATGTTGTTAGCTCAAAGTAAGATATTCAGATATTCATTATGAATGTGCAGGACATTTCAAGCAAGTTTCCTGATATGGAGTAAAATCTTAAGATTTCTCCCCATTTGTAGCATTAAGAAACCTAATGGTGGTACCTTTATGTGCACTTAATACAGACTACGACATATATTGTTACAGTTACTATGGTTCATTACGTTTTTGTTTACTTAAAGTTGTTTAGGATTTTTAAATGTTTCTGTCTTGATTTATCAATTTAATAATATCAAATATTTTAGGGTAGATCTGGCCCTAAAATTAAATACATAAATCCTATTTTTCACGTAGCAAGATTTGTTATGAGTTTAATACTAGCTAGTGATTTTATGTAGTACATTTCCTGAGGGGAGTTTGCCTACAGAATGTGAATTTTCTGCCGTGAGCTGCATTTGTTTTCTGTGAAAATCTATACTTTAAAATGAACATATAAATCACAGTATTGAGCAGTGAAAGATTATACTAAAATAATTGCCAAGAACTGATTGCAAGAAACTGTCTTTAACTGAACATCAGATGAAGCGTATAAACATGACATCTTGATGTCTTTGTGCTAAAAAATTTGACTTGTAGGCTGTACTGTACGCTTCAATGTTTAAAGCCAATTTTTTTTGTTTTTATTGACCAATGATCTTTTGCTCTGCTGATCTCTACTTTTATATGGGTGTTGATTTGAAGTAAAAAAAAAAAAAAAAAAAGTTTATTTTATAACCATTTGAACAACTTTGTGAACTA

Function

symbol description
clcn7 Predicted to enable chloride transmembrane transporter activity. Predicted to act upstream of or within chloride transport and transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in intracellular membrane-bounded organelle. Is expressed in several structures, including EVL; blastomere; head; periderm; and pleuroperitoneal region. Used to study lysosomal storage disease and osteopetrosis. Human ortholog(s) of this gene implicated in autosomal dominant osteopetrosis 2 and autosomal recessive osteopetrosis 4. Orthologous to human CLCN7 (chloride voltage-gated channel 7).

GO:

id name namespace
GO:0006810 transport biological_process

KEGG:

id description
K05016 CLCN7; chloride channel 7

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000069_00966300_00979227.mRNA True 3546 mRNA 0.43 22 966300 980520

Neighbor

gene id symbol gene type direction distance location
CI01000069_00962392_00964350 NA coding upstream 1801 959810 ~ 964499 (+)
CI01000069_00932460_00950854 USP7.S, USP7 coding upstream 14853 932310 ~ 951447 (+)
CI01000069_00925578_00927804 NA coding upstream 38481 925319 ~ 927819 (+)
CI01000069_00910238_00919183 NA coding upstream 46597 909886 ~ 919703 (+)
CI01000069_00743257_00745220 NA coding upstream 220229 743182 ~ 746071 (+)
CI01000069_00994148_01017851 ARHGDIG, GDIR2, ARHGDIB coding downstream 12932 993452 ~ 1018734 (+)
CI01000069_01020120_01022182 ECI1 coding downstream 39600 1020120 ~ 1022291 (+)
CI01000069_01027083_01031960 NAT15, NAA60 coding downstream 46563 1027083 ~ 1032781 (+)
CI01000069_01047561_01050241 NA coding downstream 66975 1047495 ~ 1050340 (+)
CI01000069_01099046_01114142 TMEM114 coding downstream 118526 1099046 ~ 1114404 (+)
G273761 NA non-coding upstream 41894 922448 ~ 924406 (+)
G273459 NA non-coding upstream 204529 761569 ~ 761771 (+)
G273456 NA non-coding upstream 209058 757005 ~ 757242 (+)
G273408 NA non-coding upstream 461180 504865 ~ 505120 (+)
G273770 NA non-coding downstream 42650 1023170 ~ 1023898 (+)
G273827 NA non-coding downstream 104212 1084732 ~ 1084941 (+)
G273850 NA non-coding downstream 138856 1119376 ~ 1120080 (+)
G273848 NA non-coding downstream 167944 1148464 ~ 1178111 (+)
G273955 NA non-coding downstream 365857 1346377 ~ 1346723 (+)
G273359 NA other upstream 487219 477727 ~ 479081 (+)
CI01000069_02033431_02040119 EIF3D.S, EIF3D other downstream 1052880 2031954 ~ 2040427 (+)
G274270 NA other downstream 1692104 2672624 ~ 2681158 (+)
CI01000069_02894136_02894807 COX6A2 other downstream 1912326 2893418 ~ 2894947 (+)
G274603 NA other downstream 2819503 3800023 ~ 3803501 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location