XLOC_025510 (hspb9)


Basic Information

Item Value
gene id XLOC_025510
gene name hspb9
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 33300522 ~ 33301321 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00050298
CTGAAGCAAGCAGATCACTCTACTAAGAGCACTCAAAATCTCAAGAGAGAGAAATGTCTTCCTCTGAGAGAGCTTTCATGGACGACCCTTTCTTTGAGAACTCCTACTTCTTGTGGCCCAGACGCGGCATGCCTCTTTCCAGCTTCAGAGAGGATTTTCTCCACCGTAGAGCCCAAATAATGCAGAACCTGAGGAGTGAGATCAGAGACAGTTTGCTGAATGAACTTTGTGAAGATTTCTTCCAAACTCTAGATGGTTCCTCAACCTTCTCCAGGCTGTTCAGCACTGACCCAGAGCAGAAGAAGAAGCAGGACGTGTCTCTTACTCTGGACACCCGAGGCTTTTCTCCAGAGGATGTGAGTGTCACGGTGTCTGGACGAAGGCTGGAGGTGATGGCCGGAAAGAGGGCTGAGAAAAACGCTTCTTCGTCATCTGCTGAGTCCCAGGCTCAAGAGTTTGTTCAGGCCGTGCAGCTTCCTGATCACCTGGATCCAGCTTCATTGACCTGCTCACTTGGTGAAGATGGACTCCTGCATATCGAGACACCAGAAGAAACCAAAGACGAGTCCTCGGAGGAGCACGTCGTTCCCATCCGCTTCAGGACATCCCTCGATTTCCCCATAAACAAGGACAGATCAAACAAAACAGAGGATGAGAAGTCAAACTAGAACAGACTGATGACATATTGAGCATTGTAtaattgttttcatgaatccagtGGATGAtcttgctgtaaatgtaaataatttgttcTGTTGGAATAAAAAATTGTTGATTTAATAAAGATGTTCATTGGTATG

Function

symbol description
hspb9 Is expressed in notochord and somite. Orthologous to human HSPB9 (heat shock protein family B (small) member 9).

GO: NA

KEGG:

id description
ko03110 Chaperones and folding catalysts

ZFIN:

id description
ZDB-GENE-080214-6 Is expressed in notochord and somite. Orthologous to human HSPB9 (heat shock protein family B (small) member 9).

Ensembl:

ensembl_id ENSDARG00000078674

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00050298 True 800 mRNA 0.46 1 33300522 33301321

Neighbor

gene id symbol gene type direction distance location
XLOC_025509 NA coding upstream 105807 33193368 ~ 33194715 (+)
XLOC_025508 CR392003.1 coding upstream 252132 33045883 ~ 33048390 (+)
XLOC_025507 NA coding upstream 255500 33043644 ~ 33045022 (+)
XLOC_025506 NA coding upstream 256972 33041307 ~ 33043550 (+)
XLOC_025505 NA coding upstream 271495 32976882 ~ 33029027 (+)
XLOC_025511 pyya coding downstream 39618 33340939 ~ 33344780 (+)
XLOC_025512 mpp2a coding downstream 44026 33345347 ~ 33379440 (+)
XLOC_025513 CABZ01012962.1 coding downstream 82961 33384282 ~ 33419664 (+)
XLOC_025514 CR396582.1 coding downstream 106267 33407588 ~ 33407710 (+)
XLOC_025515 gtpbp1 coding downstream 139294 33440615 ~ 33459764 (+)
XLOC_025429 BX649540.1 misc upstream 3051486 30248739 ~ 30249036 (+)
XLOC_025516 CR396582.2 non-coding downstream 148779 33450100 ~ 33450219 (+)
XLOC_025517 NA non-coding downstream 258771 33560092 ~ 33573516 (+)
XLOC_025521 BX649502.3 non-coding downstream 776879 34078200 ~ 34079170 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000069_04527086_04527715 NA coding CI01000069 null 4527001 ~ 4527814 (+)
eurasian perch (Perca fluviatilis) G174575 hspb9 non-coding NC_053128.1 CM020925.1 13613384 ~ 13614182 (+)