XLOC_025584 (gosr2)


Basic Information

Item Value
gene id XLOC_025584
gene name gosr2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 37649436 ~ 37660860 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00050408
GGGCGTCTAAAAGAGGTCCTTTTTTCCGGTGACGTGTATTTTTGACAACGATATGTGAAACTAAACGAAACGGAAACAATAAAACATTGCATAACTTTCGATTAAAgctttttaaagctgtttttgtTTATGCTGGTGTCTCTGACCGTCATTGAAGATGGAGACGCTTTACCATCAGACCAATAAACAAATTCAGGAGGTTCAGTCTCAGATGGGACGCCTTGAGAAAACAGACCGACAGTCAGTCCACTTACTGGAAAATGAGCTTCAAGCCAGAATTGATCAGATCTTTAATCAGCTGGAGCGCCTGGAGATTCTTGCCAGTAAAGAGCCACCAAACCGCCGCCAAAATGCCAAACTCCGTGTTGATCAGTTAAAGTACGATGTGCAGCATCTTCAGACAGCCTTGAGGAACTTCCAGCACAGAAGATACGCTCACGAGGCTCAGGAAAGAGAACGAGAGGAGCTCTTGAGTCGAAGTTTCACAACAAATGACGCAGACACCTCAATCCCTATCGATGAGACTTTACAGTTCAATAGCAGTCTACAAAACGCTCACAGAGGAATGGATGATCTGTTGGGTTCGGGCTCCAGCATCCTGAATGGCCTGAGAGACCAGAGGAGCACACTtaagggcacACATAAAAAGATGTTGGATGTGGCGAACATGTTGGGTTTGTCGAACACGGTCATGCGTTTGATTGAGAAGCGAGCGTCACAGGACAAATTCATCATGATGGCTGGAATGCTGGCTACTTGTGTGGTCATGTTTCTGGTGGTGAAATACCTTAGCTGAACTTTTTCAGTTTTCTCTGATTCTGTCTCTTGATGGTGTCTGCAACTCATTCCGGTTTTCGTGGCACGTGCATCCCATCTGTGAAAAAAATGTACAGGTTTAAAGAAAAATCACACAACTGCCTATTGCAGGTGAACTGCCAGATCGTCTTCACAAATCTTTAGCatctgtcttaaaaaaaaaacattgaatccTTTCATAACTTTCCTCTCGGATTCTCAGATTTGTGTGACTGCTATTTATGTTGGAGTCTCTGCTAATCTATAAACATCAGCCTAGCCGCTAGGTGTGGCTGTTACTAGAATAGCAGCAGCGCTAATAGTCATTATTAATAGAATATTAAAAGACAATTGTTaaactagagcaggggtgctcaatcctgttcccgGAGAGCTACATTACCTTCCTGCAGTATTCAgctccaaccttgatcaaacacacctgaaccaattaattaggacctgaaaagcacttgataattacaggcaggtgtgttggataAGGGTTGCAACTTAAACGGGCTTGAGCACCCCTGGACTAGAGTATTGGTTTGTCATTTGGCTCTACATCGCCACCTTTTGGACagcaaaaatgcttttttgtACTGTGTTGTTCACGACTCTCTTCTAAGCTGTACATACAGATTTATTGGAAATGCTGTGCAAtaaagtcaaacacacacacata

Function

symbol description
gosr2 Predicted to enable SNAP receptor activity and SNARE binding activity. Predicted to be involved in intra-Golgi vesicle-mediated transport and vesicle fusion. Predicted to act upstream of or within protein transport and vesicle-mediated transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of SNARE complex. Predicted to be active in Golgi apparatus; cytoplasmic vesicle membrane; and endoplasmic reticulum membrane. Human ortholog(s) of this gene implicated in progressive myoclonus epilepsy 6. Orthologous to human GOSR2 (golgi SNAP receptor complex member 2).

GO:

id name namespace
GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport biological_process
GO:0006891 intra-Golgi vesicle-mediated transport biological_process
GO:0006896 Golgi to vacuole transport biological_process
GO:0006623 protein targeting to vacuole biological_process
GO:0042147 retrograde transport, endosome to Golgi biological_process
GO:0048280 vesicle fusion with Golgi apparatus biological_process
GO:0016192 vesicle-mediated transport biological_process
GO:0015031 protein transport biological_process
GO:0005789 endoplasmic reticulum membrane cellular_component
GO:0005794 Golgi apparatus cellular_component
GO:0012507 ER to Golgi transport vesicle membrane cellular_component
GO:0031902 late endosome membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0031201 SNARE complex cellular_component
GO:0005484 SNAP receptor activity molecular_function
GO:0000149 SNARE binding molecular_function

KEGG:

id description
ko04130 SNARE interactions in vesicular transport
ko04131 Membrane trafficking

ZFIN:

id description
ZDB-GENE-030131-3290 Predicted to enable SNAP receptor activity and SNARE binding activity. Predicted to be involved in intra-Golgi vesicle-mediated transport and vesicle fusion. Predicted to act upstream of or within protein transport and vesicle-mediated transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of SNARE complex. Predicted to be active in Golgi apparatus; cytoplasmic vesicle membrane; and endoplasmic reticulum membrane. Human ortholog(s) of this gene implicated in progressive myoclonus epilepsy 6. Orthologous to human GOSR2 (golgi SNAP receptor complex member 2).

Ensembl:

ensembl_id ENSDARG00000053070

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00050408 True 1483 mRNA 0.43 6 37649436 37660860

Neighbor

gene id symbol gene type direction distance location
XLOC_025582 NA coding upstream 21551 37596729 ~ 37627885 (+)
XLOC_025583 NA coding upstream 33079 37599267 ~ 37616357 (+)
XLOC_025581 NA coding upstream 52906 37595341 ~ 37596530 (+)
XLOC_025580 wnt9b coding upstream 67816 37574885 ~ 37581620 (+)
XLOC_025579 NA coding upstream 172003 37475789 ~ 37477433 (+)
XLOC_025585 map3k14a coding downstream 46572 37707432 ~ 37742595 (+)
XLOC_025586 NA coding downstream 90276 37751136 ~ 37754962 (+)
XLOC_025587 rps11 coding downstream 126369 37787229 ~ 37789244 (+)
XLOC_025588 CR388062.3 coding downstream 126958 37787818 ~ 37787902 (+)
XLOC_025589 CR388062.2 coding downstream 127343 37788203 ~ 37788289 (+)
XLOC_025429 BX649540.1 misc upstream 7400400 30248739 ~ 30249036 (+)
XLOC_025574 NA non-coding upstream 713301 36895432 ~ 36936135 (+)
XLOC_025590 SNORD35B non-coding downstream 127616 37788476 ~ 37788560 (+)
XLOC_025591 CR388062.4 non-coding downstream 128001 37788861 ~ 37788945 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000046_05344388_05350795 NA coding CI01000046 null 5343902 ~ 5352165 (-)