XLOC_025580 (wnt9b)


Basic Information

Item Value
gene id XLOC_025580
gene name wnt9b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 37574885 ~ 37581620 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00050407
ACTGTCCAGCACAGCAGGGATTTCAACACGGACAGATAGCGCAATGAAGAGCAGCGCCGACCCGTCATCATGTGCACCGGGCTTCCGAGGACTGCCTGTCCGCTGCGACTTATTGCCCTCTGCATCCTTCTCTCCCACGCAGCAGCCTATTTCGGGCTTACAGGTCGCGAGCCTCTGGTTTTTCTGCCGGGTCCATTTGCCAACGAGCCTACAAACGGTAAAGCGCACCTGAAGCAATGCGAGCAGATGACTCTGACGCGCCGGCAAAAGCGCCTGTGCCGTCGGGAACCAGGGCTGGCAGAGACTCTGCGAGAATCTGTCCGCCTCAGCCTCCTCGAGTGCCGCTACCAGTTCCGCAACGAGCGCTGGAATTGTAGTATGGATGGCCGTGGAAGTCTTTTAAAGCGAGGTTTTAAAGAGACGGCCTTCCTGCTTGCGGTGTCATCTGCAGCATTGTCTCACGCGCTTGCCAAAGCGTGCAGCTCTGGGCGCATGGAGCGCTGCACCTGTGATGATTCCCCTGGCCTGCAGCACCGTGAGGCCTGGCAGTGGGGAGTATGTGGGGACAATCTGAAATACAGCACCAAGTTCCTCAAGAAGTTTTTGGGGCAAAAGAGGGTCAGCAAGGACCTGCGCGCCCAGATTGACGCACATAACATAAATGTTGGAATCCGGGCCGTGAAAAGTGGACTTAAGACTACTTGTAAGTGTCATGGTGTTTCCGGTTCATGTGCTGTAAGGACGTGCTGGAAGCAGCTCTCCCCGTTTCAAGACACAGGTCATCTGTTGAAGTACCGCTATGACACAGCTGTCAGAGTGCACAGCGTTACCAACTCTGCCACGGGGGAAACAGAACTGGCGGGCCCTCGCCGCCACAGCATCACGCTTCCCCGACCCCGTCCCACTGAACTGGTGTTTCTGGAGGAGTCGCCCAGCTTCTGCAGGCCATCCCGCTACTCGCCTGGGACTGCAGGCAGACCGTGCTCCAAGGACACCAGCTGCAGCAGCCTGTGCTGTGGACGGGGCTACAACACTGCCCTTCGCCTCACCACCCTCTCCTGCCACTGTCAGGTCCGCTGGTGCTGTCACGTTGAATGTCAAACCTGTCTCAGAGAGGAGGAGGTCTATACGTGCAAGAAACACTGATTAACCTTGCAAGACACAGAGTGAGAGGGGAAGTAAACAGAGGCAAATGAGTGGGACATGGGGAGTGCTGAGAATTGTGTATGCATCTACTAGTCAGCTAGAAGAATTTGGAAGGGTTTGGAGGTTGTTGAGGATGATTTGCCAGCCTAACCTGATTTAGATGAGATGGCTTAATGGTCGAGTGTCACTTTCTGAAACTCTAGGCTCCTACATGGAGCAGATGCTTGACGGGAGACCATGTTCATTTAGTTTGAGCAATCAGTGCTTGAACAAGCTGCTTATCTATGTCCCTCCTTCAACGTCTACCAGCCACGAAAGTCCTATGTGGTGCTTGGGCCAAGACCCAGGCCTCGAATCTCCAACATAGACAGCAAAACAAATATGTATACCTCCTCCTTCTCATATGAAGGAGTATATGAAACTCGTGCAACAAGTATGAGCGAACTTGGACATGGGGCCAAGAGCATGCTTGAGATTCTTTCATGCGGTCAAAGAAAGAAATAGGACATTTCTTATGTATATTTCCCAGCTTCTCAAAAGAGGTGCAAGTTTGAACCGGAACACATTATCGATTTTTACCAACCTCATGATGAAGGCTGACTTTTGAACTGTTTTTATTGAATGCACACCCCTATGGCAATGGATTAGCAGGCTGCAATGTTTAACTATACCGAAAGTAATGTTCTGAAAGTGAGCACTTTTTTAATGCTTGCTTGCATTTCTCTACCTGCCTATACTGTATATCTCTCTATTGCTCTGAGAGTCCACATATGGCTTCAAAATATACTGAAAGTATGAAGCacttaa

Function

symbol description
wnt9b Predicted to enable cytokine activity and frizzled binding activity. Predicted to be involved in canonical Wnt signaling pathway; cell fate commitment; and neuron differentiation. Predicted to act upstream of or within Wnt signaling pathway. Predicted to be located in extracellular region. Predicted to be active in extracellular space. Is expressed in several structures, including apical ectodermal ridge; fin; head; otic vesicle; and pericardial region. Orthologous to human WNT9B (Wnt family member 9B).

GO:

id name namespace
GO:0060070 canonical Wnt signaling pathway biological_process
GO:0030182 neuron differentiation biological_process
GO:0045165 cell fate commitment biological_process
GO:0007275 multicellular organism development biological_process
GO:0016055 Wnt signaling pathway biological_process
GO:0005576 extracellular region cellular_component
GO:0005615 extracellular space cellular_component
GO:0005102 signaling receptor binding molecular_function
GO:0005109 frizzled binding molecular_function
GO:0005125 cytokine activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-080201-1 Predicted to enable cytokine activity and frizzled binding activity. Predicted to be involved in canonical Wnt signaling pathway; cell fate commitment; and neuron differentiation. Predicted to act upstream of or within Wnt signaling pathway. Predicted to be located in extracellular region. Predicted to be active in extracellular space. Is expressed in several structures, including apical ectodermal ridge; fin; head; otic vesicle; and pericardial region. Orthologous to human WNT9B (Wnt family member 9B).

Ensembl:

ensembl_id ENSDARG00000037889

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00050407 True 1953 mRNA 0.51 4 37574885 37581620

Neighbor

gene id symbol gene type direction distance location
XLOC_025579 NA coding upstream 97452 37475789 ~ 37477433 (+)
XLOC_025578 fmnl1a coding upstream 339585 37196258 ~ 37235300 (+)
XLOC_025577 psmc3ip coding upstream 439316 37112693 ~ 37135569 (+)
XLOC_025576 retreg3 coding upstream 467012 37083765 ~ 37107873 (+)
XLOC_025575 PLEKHH3 coding upstream 519834 36972298 ~ 37055051 (+)
XLOC_025581 NA coding downstream 13721 37595341 ~ 37596530 (+)
XLOC_025582 NA coding downstream 15109 37596729 ~ 37627885 (+)
XLOC_025583 NA coding downstream 17647 37599267 ~ 37616357 (+)
XLOC_025584 gosr2 coding downstream 67816 37649436 ~ 37660860 (+)
XLOC_025585 map3k14a coding downstream 125812 37707432 ~ 37742595 (+)
XLOC_025429 BX649540.1 misc upstream 7325849 30248739 ~ 30249036 (+)
XLOC_025574 NA non-coding upstream 638750 36895432 ~ 36936135 (+)
XLOC_025572 NA non-coding upstream 725049 36835187 ~ 36849836 (+)
XLOC_025566 NA non-coding upstream 1149052 36424002 ~ 36425833 (+)
XLOC_025559 NA non-coding upstream 1457138 36115306 ~ 36117747 (+)
XLOC_025586 NA non-coding downstream 169516 37751136 ~ 37754962 (+)
XLOC_025588 CR388062.3 non-coding downstream 206198 37787818 ~ 37787902 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000046_05383841_05389838 WNT9B coding CI01000046 null 5383480 ~ 5390336 (-)