XLOC_025566


Basic Information

Item Value
gene id XLOC_025566
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 36424002 ~ 36425833 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00050380
AGTAGCCTTAGCTATAATAAAATAGCCACAAACTAGATCAGTTTGGTTGTGAAATGATCGTCGCACTTCCGCAAAATCACCTCAGCGGGTCAACAAACATCCTGCATGAGCCGCTTTCAGTTCCCCGAGACAGGTGTTGCTCTGTAACCCGGAAATACGACAAACAAACACAACAGTGTTTAATAAGCGGGACCATTCTGACTGAAGTCATGGACAAAAGCATTCAACAGGACTTTGAGAACCAGTTCAATGATGTGGTCTCAAGACTACAATCAAAACAGATGTTTCAGTCAGACTGGGACATTGCCTCATTTGCCATTTTCTTCATCTTCATAGGTATGGTCCTCCTGCTGGTCATCTTGGTCCTCATTcgctgctgttgctgctgctgctgtgatGAGAAGCCAAGACGACAGAAGGTGGGCATCGACAACATGGGAATGGAgccatgatccttcagaaacaaAAGGGATTACCTATACAAAATGTCAGATTATGTgacttcatttttttatatagcaAAAGTATACCTAATCATTAGTTGTACTTGAAAACGCAGCATAGAAAACACGTTTTCGGTAGATACTTCCTTATAGGAATGATAAAAGCTAAAAACTTTCCCTCCtgtgtaaaaatgttaatatttaccCAGGATGTCACAAGACTGAAGCTGTGATGGCCGTTTCAGATATGAGACACTTGTTCAGAAAGATTTttatagcctatataaatatgcgCATTCATTTTAATACTTTAGTTACTTTGTGGTTAAACAAAATATtgaagcactttttttttctggaaccAAAGCAGTCCCTTAAACAGCCTTGTATTGACATATGTTGTCTTTGAAGATTGTTTTTAACTTCAAATTGTTTGTTACTGGTTATCCCAGATAACAACTTTTACTTAATTTAGATTTTGACTGTATTTGTTTCAACATATTTAACACATTACCTAAACCCTTTTCTGAGAATACCTGAGAAAAATTAGCATGTTTTGCTAACATAGAAATTGGAAgttggaatgttttgaatgcaTGACATTATTTGTATGAGATGTAAACTTTGTTAATCaaccataaatgtttaaaatatc

Function

GO:

id name namespace
GO:0006883 cellular sodium ion homeostasis biological_process
GO:0036376 sodium ion export across plasma membrane biological_process
GO:0055075 potassium ion homeostasis biological_process
GO:0055078 sodium ion homeostasis biological_process
GO:0140115 export across plasma membrane biological_process
GO:0030007 cellular potassium ion homeostasis biological_process
GO:0005391 sodium molecular_function
GO:0019829 ATPase-coupled cation transmembrane transporter activity molecular_function
GO:0022853 active ion transmembrane transporter activity molecular_function
GO:0008556 potassium transmembrane transporter activity, phosphorylative mechanism molecular_function
GO:0015662 ion transmembrane transporter activity, phosphorylative mechanism molecular_function
GO:0042625 ATPase-coupled ion transmembrane transporter activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00050380 True 1098 lncRNA 0.37 4 36424002 36425833

Neighbor

gene id symbol gene type direction distance location
XLOC_025565 rgs9a coding upstream 20768 36366053 ~ 36403234 (+)
XLOC_025564 slc16a6b coding upstream 95330 36313532 ~ 36328672 (+)
XLOC_025563 zgc:86896 coding upstream 117599 36275633 ~ 36306403 (+)
XLOC_025562 dus1l coding upstream 191349 36222799 ~ 36232653 (+)
XLOC_025561 SLC16A3 coding upstream 256608 36160979 ~ 36167394 (+)
XLOC_025567 si:dkeyp-72e1.9 coding downstream 89543 36515376 ~ 36586979 (+)
XLOC_025568 pdxdc1 coding downstream 190880 36616713 ~ 36644776 (+)
XLOC_025569 gspt1l coding downstream 220221 36646054 ~ 36664310 (+)
XLOC_025570 nde1 coding downstream 245752 36671585 ~ 36684388 (+)
XLOC_025571 abcc1 coding downstream 287644 36713477 ~ 36743962 (+)
XLOC_025429 BX649540.1 misc upstream 6174966 30248739 ~ 30249036 (+)
XLOC_025559 NA non-coding upstream 306255 36115306 ~ 36117747 (+)
XLOC_025558 NA non-coding upstream 400470 36017823 ~ 36023532 (+)
XLOC_025555 NA non-coding upstream 458490 35958678 ~ 35965512 (+)
XLOC_025572 NA non-coding downstream 409354 36835187 ~ 36849836 (+)
XLOC_025574 NA non-coding downstream 469599 36895432 ~ 36936135 (+)
XLOC_025579 NA non-coding downstream 1049956 37475789 ~ 37477433 (+)
XLOC_025581 NA non-coding downstream 1169508 37595341 ~ 37596530 (+)
XLOC_025582 NA non-coding downstream 1170896 37596729 ~ 37627885 (+)
XLOC_025557 dre-mir-365-2 non-coding upstream 462916 35960989 ~ 35961086 (+)
XLOC_025556 dre-mir-193a-1 non-coding upstream 463992 35959912 ~ 35960010 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G197755 NA non-coding CI01000046 null 6673660 ~ 6675496 (+)