XLOC_025558


Basic Information

Item Value
gene id XLOC_025558
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 36017823 ~ 36023532 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00052740
CCTTCGTCTACtggttatttttttacaatttatgatggcatactgccaaaaatgggacaaatgagctcatataggggccaaattctggaccacccaaacccccctggctacaggtctGCGTCTTAAAAAAATGTGGGCACCCCTGTGCAATAGGTTTCCAACTTTGTCCACTAGATGCAGACAAAATGACAATTTTTGCAAGCTGAAGTAAACAGAGTAACGTTCCCAGATTAATACCTATTTCTTgataaagcaataaaaaaaaagtctcatcatttcaaatcatgccaaacaagtcatttattgtacatttcaaaTTTGTCATAACTTTGAGGCAATTGTTTAATTTTCtgaaagcttttttattttcatttgtcctTTCCTACTTGTGAAATATAAACAAGTAATAGTGATCTAGTTATATACCCACACACTGGACAAAAGAAAGGTCTATGCTTTTCTATAACAACCAAAGaaaaggtgtaaaaaaaaaaaaaaaagtaaattaaaaaggtTGTCTTAACCATGACCCACAAACTGTGTAATGTCTAACCTGTAGCAGTGGACACAGACACAGCACGACTCCTTAAAATGTGCAAAAGAAAAAACGACACTGGGTCAGGGTTTGGTCATCCAAGTGTTGAACAGAAATCATATGAAACATTAAAGTTTTAATATGAGCTTAAAATCCAATTTCCTTtctttaaattaataatgaaGAATGAGTTTTGTCTGTGACAGTTACAAATGATTTATACATTACTTGGTCGCACGTCTAACTTACTGTTTTCTCATAAAACTATAAAAGACAGCCTTtcctttattcattaaagttGATGAGTGGCACATCAATACAAATATTAACTAGTCTCTGTACAACATTTACAATGAGtgaaaaacaaaatgctacaACACAAGTCCAACAGAAAGATATAAAAGCTCCTCTATAAATGATTAATAGTTTTTGAAACAATCCAAAAAACAGTCATTGTTACATTCCAAATAAAGGAAACACAAACAGAAGGAGATTAAGACCATGCAAAGAAACAGATTCAGTACAATTTGTGCAACAAAGCAAAACTAGTTTGTGACAATCGAGCGTGTAGCAGTTTTGGCTCCTTTCCGTAAACTACACAAGAATCGAAGATACTGTGATGATCACGTCGTGTTTGACTGGCTAAATCTAAGAGATGGGAATCGGGGAATACGGAATACTGTGAGTGTGGTGATACATTCATGGGATGTACAGTTCAAGCACTTGCTTATGACAGTTAACTGTGCAGCTTCCTTTACCCATGGCACTGATGTACAATATTAACATATGAACATATTTAGAATTTATTCAAATTCTCAGCTTGTCTGGATTCATTTGATTTAGATGGTAACATCTGTGTTCATTTATTAAGATACAcattttcccttggcttagtcccttatttgtcaggggtcgccaactattccagcatatattttttttttatgcagcggatgcccgtccagccacatcccagtactgggaagggTATAATGACATGTCTTTAGCAATTTCAAATGTTGTCGttagatttaaaattaaaattaagttaaaattataaataggtagaaatttcaaataaattaatttgctGTGATTGAAAATCTTTCCCatggatgggttgcggctggaagaaaatgaatgaatgattgaaaatcAGGATTATTCCACAAACTCTTTTTAAAAGAAAGAAGTTAAAACATTGTTATTGTGTCTgtgttaatttattcatgtgagaaaacatgaaaaaaagttttttatgcgttaaatatacaaataaaaatttggATCACAGAAAGTTGtgaatccagagaaactgagaattttcttttttttattattattatttcatatttagcCTATATATACTGTTGGAAAgttttggggtcagtaagatttttaaccTGAAGTAAAGCAGCGTTATTATTCCAGTCTTTAGAGTAAGAAATCACaatacttcagaaatcattctaatatgctgactTTGCGCttaaatatttagctttttttttttacaattctggAAACAAATTTGCGGGATTGTAAATTAGAttgatgaatagaaagtttaAAAAGACAGCATGTATTTGAAATTCTTGTATTTGAACTCTCTGTCACTTTTTGATTAATTCAGTGCATCGTAGCTCTACAGGTTTATTTTCTATTACAAATATACATCTcaatgaccccaaacttttaaagCTAGTGTCTGaatttgcatatatttgagaTTTAAGACCACACATTGTTCTAATAGAGACACAGAGCATAATCTTTATGTTTAATCACACTGTATTATGATCATAATTTAGTGGGGTTCCTTACGGTGGCCGAGAGCTTGTtgaaatttaagaaaacacatgtaatTTAAGAAAAGCGCAGGCAAATTTCAGGAATTTTCTCAGCTCTGCAGTCTAATGCTTGATCTCTAAAATGGAGGGGTTGTGGTCGAGGATGGCCAGGATGATTTTGTCCATGGAGCTCTCTGCCAATGGTGAGTCCTCT

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00052740 True 2539 lncRNA 0.33 3 36017823 36023532

Neighbor

gene id symbol gene type direction distance location
XLOC_025555 NA coding upstream 52311 35958678 ~ 35965512 (+)
XLOC_025557 dre-mir-365-2 coding upstream 56737 35960989 ~ 35961086 (+)
XLOC_025556 dre-mir-193a-1 coding upstream 57813 35959912 ~ 35960010 (+)
XLOC_025554 crlf3 coding upstream 170709 35812040 ~ 35847114 (+)
XLOC_025553 NA coding upstream 267590 35749841 ~ 35750233 (+)
XLOC_025559 NA coding downstream 91774 36115306 ~ 36117747 (+)
XLOC_025560 scpep1 coding downstream 103755 36127287 ~ 36138174 (+)
XLOC_025561 SLC16A3 coding downstream 137447 36160979 ~ 36167394 (+)
XLOC_025562 dus1l coding downstream 199267 36222799 ~ 36232653 (+)
XLOC_025563 zgc:86896 coding downstream 252101 36275633 ~ 36306403 (+)
XLOC_025429 BX649540.1 misc upstream 5768787 30248739 ~ 30249036 (+)
XLOC_025552 BX572621.1 non-coding upstream 274567 35743184 ~ 35743256 (+)
XLOC_025566 NA non-coding downstream 400470 36424002 ~ 36425833 (+)
XLOC_025572 NA non-coding downstream 811655 36835187 ~ 36849836 (+)
XLOC_025574 NA non-coding downstream 871900 36895432 ~ 36936135 (+)
XLOC_025579 NA non-coding downstream 1452257 37475789 ~ 37477433 (+)

Expression


Co-expression Network