XLOC_025556 (dre-mir-193a-1)


Basic Information

Item Value
gene id XLOC_025556
gene name dre-mir-193a-1
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 35959912 ~ 35960010 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00050360
GACATTAATGTGTTAGAGGTTGGGTCTTTGCGGGCAAGGTGAGTAGTTAAATTTACTCTCAACTGGCCTACAAAGTCCCAGTTTCTGGCTCATGTTATC

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000098319

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00050360 True 99 miRNA 0.43 1 35959912 35960010

Neighbor

gene id symbol gene type direction distance location
XLOC_025554 crlf3 coding upstream 112798 35812040 ~ 35847114 (+)
XLOC_025553 NA coding upstream 209679 35749841 ~ 35750233 (+)
XLOC_025552 BX572621.1 coding upstream 216656 35743184 ~ 35743256 (+)
XLOC_025551 traf7 coding upstream 325185 35608385 ~ 35634727 (+)
XLOC_025550 NA coding upstream 389164 35567502 ~ 35570748 (+)
XLOC_025557 dre-mir-365-2 coding downstream 979 35960989 ~ 35961086 (+)
XLOC_025558 NA coding downstream 57813 36017823 ~ 36023532 (+)
XLOC_025559 NA coding downstream 155296 36115306 ~ 36117747 (+)
XLOC_025560 scpep1 coding downstream 167277 36127287 ~ 36138174 (+)
XLOC_025561 SLC16A3 coding downstream 200969 36160979 ~ 36167394 (+)
XLOC_025429 BX649540.1 misc upstream 5710876 30248739 ~ 30249036 (+)
XLOC_025547 NA non-coding upstream 469965 35439910 ~ 35489947 (+)
XLOC_025541 BX890565.1 non-coding upstream 1049513 34910280 ~ 34910399 (+)
XLOC_025566 NA non-coding downstream 463992 36424002 ~ 36425833 (+)
XLOC_025572 NA non-coding downstream 875177 36835187 ~ 36849836 (+)

Expression


Co-expression Network