XLOC_025554 (crlf3)


Basic Information

Item Value
gene id XLOC_025554
gene name crlf3
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 35812040 ~ 35847114 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00050356
GTGCCTCAAGCCCTTTACTGTTGCCAGGGCGTCAATGGCGGAACTCCGCGGCAGAAGTTAATATGACACAAGACAGGATCGCTTAAGAGGTCAACAAGGATGTCAATAGAGGCAGAGGCGTTGCTGCAGGAGGCAAAGGAGAGCATTGAGGCGGCCCAAAACTACAGAAGTGAACTACAGCAGAGACTGCATGGACTCAGTCAGGCACGCAAACAGGTGCGTGGCAGTGCCAGTCAGACGCGTGAGGCTCTGCAGAGACACTTTCAGGAGCTGCAGACGGCAGTGAGTCGACTTCTGATCGACAGGCTGAACGGTCTGCTGCAGGAGGTGGACAACATTGAGCTGGACAGTGTCAGTCCTTTAGATGACTGTCAGAAGCTTATTGAGCATGGAGTCAGCACTGCAGATGAGCTGCTCCGTGAGGGGGAGGCTGCAATTCGCTGTAGTATAAATGAGACGGAGGACAAGCTAGGCAGCTTCACTAAAAAAGCCCTGCAGATCCAGTTGGACAGTCTGCCGGAGGTACCTTCACTGGTGGACGTGCCGTGTCTGTCCGCGCAGCTGGACGACTCTCTGCTGCATATGTTTCGTGCTCATGTGGCTCGGCATGGCAGTGTAGCGTCTCATCCACCCGTCCAGATTGAGGAGCTGGTGGAGAGACCAGGTGGTGTGCTGGTGCGTTGGTGTAAGGTGGACGATGACTTCAGCCCTCAGGATTACCGGTTGCAGTTCCGCCGCAGTAACTCTTCACAGTACGAGGATGCGTATATTGGGAAGGACACAGAGTTCCTGGTGCTCCACCTCGACCCACACGTTGACCACCTGTTCCGTGTGTGTGCCAGAGGAGAGGGGCGGACGGAATGGAGCCCATGGAGCATCCCACAGACCGGCTACACCACACTAGCACCTCACGAATGGTGTCCAGGCGTGGATGGCTACATATTGAGCAGTAGGAAGAACATCGCCATGCGCAGTGACTCCTCAGCACCTGGTCATGGTGGAGTCCTGTACTCCAACTCCCCCACCTACTTCTGTGGCCAGACCCTCACCTTCAaaATCACTGCTGCTGGACAGACAGATAAGCGTGACAGTTTGGGTGTGTGCGCCGACAGCAGAACTGACACAGACTCACTGCAGAGAGATCAGGCTGTCTGCATCTCCACTAATGGTGCAGTGTTTGTAAATGGCAAAGAAATGACCAACCAGCTGCCAGCCATCACTGTTGGCTCCTCCGTGACCTTCGACATGGAGATGGTGAGCCTGTTTCCCGTAAACAACAACAACCCCAGCGACGGGGGAAACTTCAAGCTGAGAGTGACGATCGGCTCTGGGAACAGAGAGGTGGTGTTTGATTGGCTGCTGGATCAGGTCCTCGACAGCCTTTTCTTCGGCTGCTCCTTCACACACCCTGGATGGAAAGTGctggtgttctgattggttacaGTCTGCTGGAATTCAAGACctcaaatctttttttatattatcaaACTCTCCAAGTGCTTACACAGTGTTCTGAATACCCCTCCCTTTTTTCCCTAATATCAGTTGCGCAGGATAACATTAACGCTTTCTGAGGTGTGCGTCTGACGAAAACCACTACTCTTTGACCTCAGTACATACAGGTGGACGAATGTTTTTTTGCATTATTGTACATATTTGCAAAAAAAGATAGACTGTTACATGTCGGAGGAGTTTAATAAAGTCTGTACCTGCAGGTGTTACATTGCAAAGCATGCTGGTTTGGTTTACCACAGAAACTGTGTACTGTGAAGCAGTCGGAGATCAAAGGCACTCaaactgtttttttgttgttttttttaaacaaactgctTCACAACAAACGACGAAGATGATTCAGTTAAGCTCAGACAGTCTTGTTTTAGTTTGAGTTAGACGTGGAGAATGTATCGTCTGTAGTTTGTTTGAAATGGctggatgttttattttgaacAGTAAGTTAATGTTAAGCAATGGTGTGCCTAACTAGTATTGTATTCTTGATCGCCTGGTActtgtgttttcattttttttctatcaCAGGGTGAAGAAAGCCTTAACCAGTGTCAATCACCGCTCAACTATGATCAGTACATATAGATGTTTTCACAGAAATGTGACAATTCGCACTAAGCTTAAGTGTTGTGCCAATTTATGTTCACCTTTTAATACGTACCTGTTCCGTTTCGTTAGATTGCTTGTAGTACGGTTTACATTGTATTGGATGGAGATTTTCACATTTCACAACACAAAATGAGAGGCCACATACTCGATTTTTACTTGTTCCTGAGATCACTGAATATAAGTTAAGAGGTACTGAGAGACTGCTTTAAAACCAGCAAACACATACCCACAAGATATCAGAAACCATATTTATAAAACTGTGACCGTTTCACGTATATTTACCTCATTTTTGTTTGTGCCTTCTCAGTAAAGATGCGGGAATACAACTGAACATTTGCCacttaaattgtttgcaaaacgTCTTGATTTTTGCAATGAATCTGGGTCAAACATGAATGTTGTTTAGGTATCCAAGCAATAAAGAGTACTTCCAATTGAAA
>TCONS_00050357
ACTGTTGCCAGGGCGTCAATGGCGGAACTCCGCGGCAGAAGTTAATATGACACAAGACAGGATCGCTTAAGAGGTCAACAAGGATGTCAATAGAGGCAGAGGCGTTGCTGCAGGAGGCAAAGGAGAGCATTGAGGCGGCCCAAAACTACAGAAGTGAACTACAGCAGAGACTGCATGGACTCAGTCAGGCACGCAAACAGtccctttattaatccatgctcgccacagcggaatgaaccgccaacttatccagcaagtttttacacagcggatgccctttcagccgcaacccatctctgggaaacatccacacacacatacaccacggacaatttagcatttccaattcaactgtaccacatgtctttggactatgggagaaaccggagcacccggaggaaacccacgcgaaggcagggagaacatgcaaactccacacagaaatgccaattaagccgaggcttgaaccagcgaccttcttgctgtgaggcgacagcactacctactgtggcACTGCTTCGCccttgcattgtaaacattaaatacaaactaaaaaggtattactttttatttaatgtattaaggttttagttatgatactcccaaaatcattacgcataaatccgcagatttttaccaaaattatgcgcagaaatagcaaaaaatgtcagcagatttcATCTGGCCCAACCCATGGCTCATACGTGCACATGCTAGTTGGCAGTAGGGTTTCCATGTTCCACTGTG
>TCONS_00050358
CAATGGCGGAACTCCGCGGCAGAAGTTAATATGACACAAGACAGGATCGCTTAAGAGGTCAACAAGGATGTCAATAGAGGCAGAGGCGTTGCTGCAGGAGGCAAAGGAGAGCATTGAGGCGGCCCAAAACTACAGAAGTGAACTACAGCAGAGACTGCATGGACTCAGTCAGGCACGCAAACAGGTGCGTGGCAGTGCCAGTCAGACGCGTGAGGCTCTGCAGAGACACTTTCAGGAGCTGCAGACGGCAGTGAGTCGACTTCTGATCGACAGGCTGAACGGTCTGCTGCAGGAGGTGGACAACATTGAGCTGGACAGTGTCAGTCCTTTAGATGACTGTCAGAAGCTTATTGAGCATGGAGTCAGCACTGCAGATGAGCTGCTCCGTGAGGGGGAGGCTGCAATTCGCTGTAGTATAAATGAGACGGAGGACAAGCTAGGCAGCTTCACTAAAAAAGCCCTGCAGATCCAGTTGGACAGGTGGGAAACACACACTTTTATTCACTTAACAA
>TCONS_00050359
GCGGAACTCCGCGGCAGAAGTTAATATGACACAAGACAGGATCGCTTAAGAGGTCAACAAGGATGTCAATAGAGGCAGAGGCGTTGCTGCAGGAGGCAAAGGAGAGCATTGAGGCGGCCCAAAACTACAGAAGTGAACTACAGCAGAGACTGCATGGACTCAGTCAGGCACGCAAACAGGTGCGTGGCAGTGCCAGTCAGACGCGTGAGGCTCTGCAGAGACACTTTCAGGAGCTGCAGACGGCAGTGAGTCGACTTCTGATCGACAGGCTGAACGGTCTGCTGCAGGAGGTGGACAACATTGAGCTGGACAGTGTCAGTCCTTTAGATGACTGTCAGAAGCTTATTGAGCATGGAGTCAGCACTGCAGATGAGCTGCTCCGTGAGGGTGAGCAGTTCTCCAACTACACTACTACTAATCTGATTTCATGCCATTAAAAGTAGGATTTAGTCAACTGCCAGACAAGCATACCTCATTTGAGCAGGCAGTTTCTGAAAGATGTCTTATGCCAGGTTTTTATTTCacagttttgacttttt

Function

symbol description
crlf3 Predicted to enable DNA binding activity. Predicted to be located in cytoplasm. Predicted to be active in nucleus. Is expressed in adaxial cell; blood; ventral mesoderm; and yolk syncytial layer. Orthologous to human CRLF3 (cytokine receptor like factor 3).

GO:

id name namespace
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0003677 DNA binding molecular_function

KEGG:

id description
ko04990 Domain-containing proteins not elsewhere classified

ZFIN:

id description
ZDB-GENE-050417-354 Predicted to enable DNA binding activity. Predicted to be located in cytoplasm. Predicted to be active in nucleus. Is expressed in adaxial cell; blood; ventral mesoderm; and yolk syncytial layer. Orthologous to human CRLF3 (cytokine receptor like factor 3).

Ensembl:

ensembl_id ENSDARG00000070261

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00050356 False 2561 mRNA 0.47 9 35812040 35847114
TCONS_00050357 False 747 processed_transcript 0.47 3 35812056 35818407
TCONS_00050358 False 512 mRNA 0.52 4 35812072 35833330
TCONS_00050359 True 539 processed_transcript 0.49 3 35812077 35831362

Neighbor

gene id symbol gene type direction distance location
XLOC_025553 NA coding upstream 61807 35749841 ~ 35750233 (+)
XLOC_025552 BX572621.1 coding upstream 68784 35743184 ~ 35743256 (+)
XLOC_025551 traf7 coding upstream 177313 35608385 ~ 35634727 (+)
XLOC_025550 NA coding upstream 241292 35567502 ~ 35570748 (+)
XLOC_025549 rpusd1 coding upstream 262562 35542067 ~ 35549478 (+)
XLOC_025555 NA coding downstream 111564 35958678 ~ 35965512 (+)
XLOC_025556 dre-mir-193a-1 coding downstream 112798 35959912 ~ 35960010 (+)
XLOC_025557 dre-mir-365-2 coding downstream 113875 35960989 ~ 35961086 (+)
XLOC_025558 NA coding downstream 170709 36017823 ~ 36023532 (+)
XLOC_025559 NA coding downstream 268192 36115306 ~ 36117747 (+)
XLOC_025429 BX649540.1 misc upstream 5563004 30248739 ~ 30249036 (+)
XLOC_025547 NA non-coding upstream 322093 35439910 ~ 35489947 (+)
XLOC_025541 BX890565.1 non-coding upstream 901641 34910280 ~ 34910399 (+)

Expression


Co-expression Network