XLOC_025550


Basic Information

Item Value
gene id XLOC_025550
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 35567502 ~ 35570748 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00052737
CATTAATAGCGCTGCTTAATTGGGCGCTGCAAGGATTTTAAAGTAACGTTAAATCACGATGTTCTGTCTCTCAAAACTACGTGAAAGTAGCAAGCACACTTTGTGTTGCATGGACGAAAGAAAATCACGGTTCTGAATGTCACGAGGGGTTCCAGTTTCATAAGAGTGTTTCAGCGTGTGCAACCTCATGGGATGAAGCAAAAGGATGCTGAGCTGGAGGAGAGAGCGAGCCGATTGCATGATGGACCAACCCTGCTCTCTCTCTACCAGGGACCTCTCCGACCCTCCCTCCCCCTCCAGAGTCAAATGGAAAGAGAAGGTCTGGTTATTTCTGTGATGTCTGTCCATGAATTGTTAATGCCTTTGAATTGGCTGACTGCGCTTTGCTGAGCCTGAGCTGGTTAATTAGACCTAAGGGACGGAGCAGGAGAGAACAAAACTGACAAAGAAAAGTGGCATCATCTACATGGAGGGTACATGCACAGTGAATCTCACCAGGTTGGATGAGCAAAGAAGCGCATGATGTCTGACAATTTAACTCTCATCTCTTGTCAGACTGTAGCTTTTACATTTGTCTTTCAGG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00052737 True 583 lncRNA 0.46 2 35567502 35570748

Neighbor

gene id symbol gene type direction distance location
XLOC_025549 rpusd1 coding upstream 18024 35542067 ~ 35549478 (+)
XLOC_025548 tnrc6a coding upstream 34136 35495570 ~ 35533366 (+)
XLOC_025547 NA coding upstream 77555 35439910 ~ 35489947 (+)
XLOC_025546 rbbp6 coding upstream 146308 35406395 ~ 35421194 (+)
XLOC_025545 cacng3b coding upstream 191524 35298078 ~ 35375978 (+)
XLOC_025551 traf7 coding downstream 37637 35608385 ~ 35634727 (+)
XLOC_025552 BX572621.1 coding downstream 172436 35743184 ~ 35743256 (+)
XLOC_025553 NA coding downstream 179093 35749841 ~ 35750233 (+)
XLOC_025554 crlf3 coding downstream 241292 35812040 ~ 35847114 (+)
XLOC_025555 NA coding downstream 387930 35958678 ~ 35965512 (+)
XLOC_025429 BX649540.1 misc upstream 5318466 30248739 ~ 30249036 (+)
XLOC_025541 BX890565.1 non-coding upstream 657103 34910280 ~ 34910399 (+)
XLOC_025538 NA non-coding upstream 834384 34732869 ~ 34733118 (+)
XLOC_025535 BX470190.1 non-coding upstream 1208170 34359215 ~ 34359332 (+)
XLOC_025534 NA non-coding upstream 1313556 34253557 ~ 34253946 (+)
XLOC_025556 dre-mir-193a-1 non-coding downstream 389164 35959912 ~ 35960010 (+)
XLOC_025557 dre-mir-365-2 non-coding downstream 390241 35960989 ~ 35961086 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000046_06179800_06180706 NA coding CI01000046 null 6179194 ~ 6180917 (+)