XLOC_025545 (cacng3b)


Basic Information

Item Value
gene id XLOC_025545
gene name cacng3b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 35298078 ~ 35375978 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00050339
GGGAGGGAGGTTCCCAACTGTATTGAAAATTAGGTCAATGCAAATCGTGCAATTTTTAATTGTACTGCCATCAACCCAGTGAAACCAGTGATCTATAAAACTCTTCAGAATTGCCCATATAAAGGTCTCCATGGAGGAAATCATCAGAATTGTCTGTGGCTCTTTAAGGACCTTCCTGTTCTCCAGGGTCCGATTTTTCATGCATCGCTTCTTGCCCATATCTTTGCATATGAAGGCCTTAAGTAGCACATTGGTTGAGCCAGGGGCGCTGTGCGGGGAGAAACTCGGAGATTAGACGCGCGTCTCCGTCCATTCAGCAGCAGCGGCAGCAGCGGACAGCAGCCAGCGCTCCCTCCGCTCGGCTCCGCTCCCTCTGTGGGCGGTGTTTCAAACAAGCGGATTCGGGAGGAACGTGGGAGCTGTCATTGCTGTAAGACACATTTGCGGGGACCAGCATCACCGTTGACAGCAATTACAAGTGCTGggatttctgtttgtttaaacgATCACTTCTTGATAGGTGCCTTCATAACATGCTGCTCCACACATGATCAAATGTATCTTGTTCATATTCGCCAGATCTGAAGGGGGAGAGACACGAGCTGATCATGAAGTGGGATATTTTACTCTTCTCTCGTGTTTCACAGTAAAATTCCGGATGCATCAACTGAACGAAGGTGTTTTCCGTTGGATTAACGAGGGACACTGTTTTTCATACTTATTCACCGTGCGCGAGCGCTGATTtgttgccgtttttttttttcgggaAACAAAGATGTTTTTGTGAAGTCACATCGTGTCGTTCTCTCAGCCTAGTACCTCAATTGCAAAAATGCTGTGGTGCTGATGAGAGACTGCTCGTCTGTGACAGTTTTTCCACAGCCCACAATGAGAAACAAACAGCTCTCCGCGTAAGCGATGGAAACACTGTGAGGCTTCTTGCTGAACTTGAGAAGCAGCAACAGCGACTGCAACAGTCTCGACACCCCAGAAATCAACACATGATAATGGTATGGGCTTCTGAAGTCGATTGGAGCATGGAGTCCGCGCACCAGGCAGGCTAGGAGGTTTTTCAATTTTTTGCGAGACGCGCTAAGAACCCTGTTTTAACCCCCCATCCTGAAATGAGGCAAAATGTTGATGTGTGACAGAGGAGTCCAAATGCTCATCACCACAGTGGGCGCTTTCGCCGCGTTCAGCCTGATGACTATCGCTGTGGGAACGGACTACTGGCTGTACTCTCGAGGAGTGTGCCGGGTCAAAAGTAATAACGAGAACGAGACGAGCAGGAAGAACGAGGAAGTCATGACCCATTCAGGGCTTTGGAGAACCTGCTGTCTAGAAGGAACGTTTCGAGGCGTCTGTAAGAAGATTGACCACTTTCCGGAGGATGCAGATTATGAGCAGGATGCAGCCGAGTATTTACTACGAGCAGTGAGAGCGTCCAGCATCTTCCCCATCATGAGCGTCGGGCTCCTGTTCATGGGAGGTTTGTGTGTGGCTGCTAGCGAATTTTACAGGAGCAGACACAATGTCATCCTCAGTGCCGGAATCTTCTTTGTCTCTGCTGGCCTAAGTAACATCATCGGTATTATCGTGTATATATCCGCCAATTCGGGCGACCCCGGGCAGAGTGACTCCAAGAAGAGCTACTCATACGGATGGTCTTTCTACTTCGGCGCCCTGTCATTCATAATGGCCGAGATGGTGGGTGTGCTCGCCGTGCACATGTTCATCGAAAAACACCGAAAGCTGCGCGCCAAGTCTCGCACCGAGCTGATCAAGAAGTCGGCGTTCAGTCGCATCCCCAGCTACCGCTACCGATTCCGCCGGCGCTCCAGCTGCCGCTCCAGTGAACCTGCCTCTCGTGACGCTTCGCCCATGGGGAAAAGTGGCTACACAGGCCCTGCCGCAGCAGACATCTCCATGTACACCCTATCCAGGGATCCCTCCAAGGCGGCAATGGGTGCCTTGCTTAACTCCGAGAGGGAGTTTTTGCAGGCGCACAACTCCAACGCTAAGGACTTCAAAGATGCGGCCAACAGGAGGACCACTCCAGTCTGAAAGAGAGTATAAGCACAGAGAAAGTGCCAAGACCACAGACTTGAGCTGGAAGAAGAATTCACTCGAGGCCTGCAGGGCTATAACCCTCTTTCTATaacagtatatataaatatagatggTAATTGTTAGATCATTGGTGCTTCCTTTTAATCCTCATTTTTCAGTCACTGTTTTTTCTGTCGTTCCActtgactcacacacacacacagatccctCCCCCTAAGGGCTACTGGAGTAGAATGCTAGTCCTCTCCTCAGTGTCCAATGGAGATCCTCAAGGTAGCCCAGCGAAACTGTGATGAAGCCCTCTGAGGGGGAGGATTGTAACGCATCTGACAGACGAACCGAAAGGCTGTCCCAATACTCGCCTTATGCACAGCTCAGTAGCCCATAGCTGGTGAGTGGCGCCTCACGCTCACAAGATTGTATACATTGTTGGTTTTTCTCCCCGGGTTGGAAACTTGTGCCACCTTCTCATGCTGATCACCCCACTCATCCCACCTACACGCTGCCCACTTGGCCGGGCCTTGCATGCCATTCACACagatcctttatttatttatttttttgtttactccCATTGTTTCCATTGCAAACAGCCCCAGATTCCCCTGCATTAAGTTTTATAACAGGGTTAAAATGCTTGTTATTAAAATGATCTTTTAGCCCACCAAAGGTTTTTGGTATTACATTTGTTTCGTTTTAAATGTACTGAGAGGgtttttttgtgatttacaatgagatactattaatatatattaaaacaccTTAATATTAGGTTTATCGGAGGCCCTTACGCATATTAATATGGatattgtgttcatatttttgttcatcTGTTATCAAAAGAAAAGCAGTTGGCTGCCAAATGTAAATTTCTTAATTGTGTATAGTTGAAGTATTTTTAGAGAAAATATTGTTCATACATTTACCATCAAGagtttatagatatatatatatatatattaaaaaaaatgtttgaacatTATGAAAACAAAAGGAACTGCCCAGTGTATTTGAACCATTCGCATATCATGAAAAGACAAGCCTTGAAATGGACTGATATTCAGGTTCCAgtccaaacacacaaacaacacaacaacaaacgCTACGAATGCTTACGAACATGCAGCATctctttcaaaatatatactactcATCTACTATCTACATTAATGCTACATCCACGCTATACTGGACTACAAAATATAAACGTATACTGTACTTTAGTTGCTTAGTTAATATGAATATAAACTCCAAGGGCTTTTGGTTTTCAGATAAAAAGCATACAAGGGCTTTAAAGAATTTCAGCCAACCGAGAAAACAACTAATTTGCCCTTAAAATAGCTGAACCGAAAAGCATTTCTTTACCTTACGATATTAATTTATGCAAAACATATTCAAACGTGATGATATAATGTATACAAGTTTTCCTTTGCATTGTCACGATTATTAATCCCTGTGTCGGTTAGCTAGAAACGGAAGTAGATCCTGGAACATCTATAATAATGTAGGTTTCACCTCATTTCAGAATCCCCCAAGAGCTGACGTGCATGTACTTTAGCCTCCAGATTCATGCAAGCCAGATGCTCATCTCCAGTTTTATTTCATTCTGCTTATCGAAGTCATGCTAGCCTCACTGGGAATATTACTGTAAATGTTGCCTTTTGTTTGGATCCACTTTTTGTTGTGAAATTGTGCTGTTCTGGGTCCAAAACTTAAGTGTTTCATATTTGAAGGCGTCCGCCGGAGTGCTTTTGGCACAGCTGAACAGTTCAACCCTTCAAGTCTCTCTCAGAGCACCTAGTGCCTGTCTCTTCTGCCTACTCCGAGCGCCCGTCGCCGGGTCTCTCACTTTCGCTCGCTTTTGCTCCTTCATCTCCATCACTGCCTCGCATCAGCTCCTCTTTACCAGGACTGTTATTGCTCAGCAGATCACATCCATTGAGTTTTAGGCCCCGTCACTCACCACTTAGGCCTGCAACATTGTGTACGTGACCTCTCAATGAAAACAGCAGTCTCAGCTTGATACATGCTGTAGAAAAAAAGCACACCTtttaaatacagtagtttacatCAATAAAGATAATAGTCGGAGAGTATTTAAAGATTTAGACAAATAAAGTCCGTTTTAAGAATGCCAACGATGCACTCTTTGTCTTCTTCACAAAATGATTGTGCAAGCCGATCGGCAGATTTGAAATAAAGCAGTAATAAAGGAAATGATTGATCACAACTGCAGTGTTTTGGTTCGAAGTCAGGAATGGAAGGatattaaagtccaca

Function

symbol description
cacng3b Predicted to enable channel regulator activity and voltage-gated calcium channel activity. Predicted to be involved in several processes, including neurotransmitter receptor internalization; neurotransmitter receptor transport, postsynaptic endosome to lysosome; and postsynaptic neurotransmitter receptor diffusion trapping. Predicted to act upstream of or within calcium ion transmembrane transport and regulation of ion transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of AMPA glutamate receptor complex. Predicted to be active in postsynaptic density membrane. Human ortholog(s) of this gene implicated in childhood absence epilepsy and macular degeneration. Orthologous to human CACNG3 (calcium voltage-gated channel auxiliary subunit gamma 3).

GO:

id name namespace
GO:0051968 positive regulation of synaptic transmission, glutamatergic biological_process
GO:0019226 transmission of nerve impulse biological_process
GO:0034765 regulation of ion transmembrane transport biological_process
GO:0070588 calcium ion transmembrane transport biological_process
GO:0098943 neurotransmitter receptor transport, postsynaptic endosome to lysosome biological_process
GO:0098970 postsynaptic neurotransmitter receptor diffusion trapping biological_process
GO:2000311 regulation of AMPA receptor activity biological_process
GO:0006811 ion transport biological_process
GO:0006816 calcium ion transport biological_process
GO:0099590 neurotransmitter receptor internalization biological_process
GO:0098839 postsynaptic density membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0032281 AMPA glutamate receptor complex cellular_component
GO:0005244 voltage-gated ion channel activity molecular_function
GO:0005245 voltage-gated calcium channel activity molecular_function
GO:0016247 channel regulator activity molecular_function
GO:0005262 calcium channel activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-090828-1 Predicted to enable channel regulator activity and voltage-gated calcium channel activity. Predicted to be involved in several processes, including neurotransmitter receptor internalization; neurotransmitter receptor transport, postsynaptic endosome to lysosome; and postsynaptic neurotransmitter receptor diffusion trapping. Predicted to act upstream of or within calcium ion transmembrane transport and regulation of ion transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of AMPA glutamate receptor complex. Predicted to be active in postsynaptic density membrane. Human ortholog(s) of this gene implicated in childhood absence epilepsy and macular degeneration. Orthologous to human CACNG3 (calcium voltage-gated channel auxiliary subunit gamma 3).

Ensembl:

ensembl_id ENSDARG00000076401

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00050339 True 4350 mRNA 0.45 4 35298078 35375978

Neighbor

gene id symbol gene type direction distance location
XLOC_025544 prkcbb coding upstream 32018 35005062 ~ 35266060 (+)
XLOC_025543 smarce1 coding upstream 303016 34985895 ~ 34995062 (+)
XLOC_025542 ca10b coding upstream 316405 34919810 ~ 34981673 (+)
XLOC_025540 itga3a coding upstream 381037 34846201 ~ 34917041 (+)
XLOC_025541 BX890565.1 coding upstream 387679 34910280 ~ 34910399 (+)
XLOC_025546 rbbp6 coding downstream 30417 35406395 ~ 35421194 (+)
XLOC_025547 NA coding downstream 63932 35439910 ~ 35489947 (+)
XLOC_025548 tnrc6a coding downstream 119592 35495570 ~ 35533366 (+)
XLOC_025549 rpusd1 coding downstream 166089 35542067 ~ 35549478 (+)
XLOC_025550 NA coding downstream 191524 35567502 ~ 35570748 (+)
XLOC_025429 BX649540.1 misc upstream 5049042 30248739 ~ 30249036 (+)
XLOC_025538 NA non-coding upstream 564960 34732869 ~ 34733118 (+)
XLOC_025535 BX470190.1 non-coding upstream 938746 34359215 ~ 34359332 (+)
XLOC_025534 NA non-coding upstream 1044132 34253557 ~ 34253946 (+)
XLOC_025533 NA non-coding upstream 1047835 34249182 ~ 34250243 (+)
XLOC_025552 BX572621.1 non-coding downstream 367206 35743184 ~ 35743256 (+)
XLOC_025553 NA non-coding downstream 373863 35749841 ~ 35750233 (+)
XLOC_025555 NA non-coding downstream 582700 35958678 ~ 35965512 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000046_06042369_06053825 CACNG3B, CACNG3 coding CI01000046 null 6042276 ~ 6054514 (+)