XLOC_025540 (itga3a)


Basic Information

Item Value
gene id XLOC_025540
gene name itga3a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 34846201 ~ 34917041 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00050330
GAATATGAACAATCAGTTCACAGCGTCTGAGAAAACCGCTTCTGTTCAGACCCTCATATAATCTTTGTcctgcactctctctctctctctgcgtttCGCCGAACAAAAACACCGCGGAGACCAACAGAAAAAATGATTGTATTTCACCGCAAAGGACTCCGTTTAACCCTGGTGTTTGTTTTGAGCGCGGCTCGTCTCTGTCAGGCGTTCAACTTGGATGTGAGCTTTGCAGTCGTCAAAGAGGGAAAAACAGCAGGCAGTTTGTTCGGACTTTCTGTTGCACTGCACGAGCAGGTCGTGAATGAGAAGAGACACAtGCTTCTGGTAGGAGCGCCAAAAGAGAAGGCGGAGTCTGGACTGTCAGCCAATGAGACGGGAGATGTTTACGCCTGTCCGATCTCTGCAGACTCCAAAGACTGTGCAAGACTGAACCTCATCAGCTCAAATCCTGAAGACAAACCAGACCTTAAAAATTATGTGATAGATGGCATGTGGCTTGGTGTGTCCATAGTCAGTCAGAGTCAACCAGGGGGCCGTGTTGTGGCCTGTGGCCATCGCTACATTCGTAACTTCACTAGCAACTTCCGCATGATTGGGAGATGTTATGTTCGGGGAAATGACCTGCAGCTCAACCTTAGTGATTATCAATGGCAGTCGTATGACGAGATTTGCGACCCCCGAGAAGCCCAGAACAGTGAAGGCATGTGTCTGTTAGGGATGTCTGCTGCCGTTACATTCAGTGAGATCTTCTTCGGTGCTCCAGGATGCTTCAACTGGCAAGGAAATATATTTTCGAAGTGGCACAACCCTGCGGATGAGTTTCATTTATTGAAAAGCAAGCTTCCAGATTCTAGAAAAGGCAATATTTACATTGGTTACTCAACGATTGTGGACCAAGATGTTCTAGTCAAAGGCAAAGACACAGTGGTAACAGGAGCACCGAGAGACGAAGCAAAAGGATCTGTGATGATGGCTGAAGTTTTGAAAAGCGGTGGCAGTGGAgaagtcaaaataaaagtcactgtcACAGGAGAACAAGTCGGGTCATATTTTGGCAATAGTGTTGCTGTTGTGGACCTTAACAATGATGGTTGGAAGGATCTGATTGTTGGAGCCCCGTTTTATTTTGACCGAAAAATGGACAAAGGTGGTGCAGTATACGTCTACATGAACCAAAACGGATCTTTTCGTAACAAATCTGATGTGGTCCTAACTGGACCCAAGGACTCAGGTTTTGGCATGTCTGTTGTGGCCATTGGTGATGTTAACCAAGATGGCTTCCAAGATTTTGCCGTTGGTGCTCCATATCATAGCACAGGCAGAGTGTCTATATGGACAGGCAGCAAAACTGGCATTTCTCAAGAACCTAGTCAGGTCATTGATGGAAAAGACATCCCAGGTGGAGGATTCCAGACATTTGGCTACTCCATTAGTAGGGGCCTGGATGTGGACAGAAATGGTTACCCAGATATAGCAGTTGGATCATTAGATGACCGTGTGGTCTTGCTCAGATCACGTCCTGTGATTCACTTGAAGAATACTTTCACAGTGACACCGATGGTAATCAACCTTGAAGACTGTGTTGCCTGCATTGAAGCAAAAGTCTGTTTCTCCTACACATACAGCACTGGCACTGCCAGTTCCCAGAAGGCCGTGACTCTTCAATATACGGTGGAGGCCGATCAGCAGTCGTCTAGGAGCCCCCGTGTTAGTTTCCTTGACAACAATAAGGGCAAATACACTGGCAAAATGTCTGTTAATCCGTCTGGAGATTGTCATTCTCTAAAACTCGAGCTGGCGTCCAAAACAATCCAAGACAAAGTGTCTGCGATCATTTTCCAGCTGAGCGTGTCTGTGGTGGATCCTCCTCCCTCAGGCGGAAAGATGCTGGAGGATCTTAGTGCTTTTCCTGTGATCAGCCAGCGAGACGCCTTGACCGGCAGAGCCGAGATTCACATTCAGAAAGCCTGTGGCTTAGACAACAAATGCGAGAGCAACCTTCAGATGACAGCTGCATTCACAGATGAGAAGAACACACCGTTCCTCATGCAGGAAGATCACCAGATTTTCAACTACACCACCGACATAAAGAAGCTGAAGTTGTTAGTGAATGTCTCCAACGTACCATCAGAGGGCAGGAAAGCAGAAGACGCTTACAATGCTATTCTCAATATCACCATTCCAAGCTCACTCAGCTTCTCCAGCCTGAATCCCAAGTTACCATCAaCCCTGAATGGTGATCCATCTTCTGGGGGGTCTTATCTGTTGTGTACACTTGGTGACCCCTTCAaaagcaatcagaggGTGGAGATCGAGATCACGTTTGAAACATCAGGAATTTCAATAGACATGCAGGAGATTGAGACAGAGCTGCAGCTCTCAACGTTGAGTGATCAAAATGATCTACGGCCGCTGTCGAGGGTGCTGTTGGTGGAGTACATCCTACAGCcgctttttaatttaatCCCTTACTTCAGGGCAGAATTCAGTGGCAATGTAGTGGGAGAGTCGGCCATGAAGAGTACCAGTGATATCGGAAGCCCAGTGGAATTCAACATCTCGGTGGACATTTCTGGAAAACCTTTGGGAAATCTGGGCTTTCTGGAAGTGGTCTTTCAGTGGCCTTCTGCCGTGGCTAATGAGAAGTGGCTGCTTTACCTATCAGAGATTCAGATGACGGGAACATCAGAGTCCTTCTGTGTCGCTAAAGGCATCGTAAACCCCCTTAATCTCACAGTGTCAGAGCGTAAGTCTAGGAGGAGGAAAAGAGACGAGGTCTTGTCAGAGTCCAAACTGGCTATGTCGCAGAAAACCCGTCAGGGCCAAAACAAGCCTAGAGAAGTCCTGAACTGCACCAAGGGCACTGCCCGCTGTCAGACCTTCAGCTGCCCTTTGAGCGCAATGAAAACCTCCGCCATGCTTACCGTCAGAGCGCGTGTTTGGAACAGCACCATGCTTGAGGACTACAGAGCTAAAGGAGTGAGTGTGCAAGGCAGTGTCATGCTGActctaaaaacagacaaaaaaaacatcaagatGAACAATAACATCCGTGAGTTTACAGTAGAAATAGACCCCGCAGTGGCTGAAGAACTACCGTATGAAGCTCCTTTGTGGATCATCATTGTGTCCGTTCTGTCAGGAGTGGTTATGCTGGGCGTGATTGTTATTCTTCTGTGGAAGTGTGGTTTCTTCAAGAGGGCCAACACCAGAGAGCTTTATGAGGCCAAGGCCCAGAAAGCAGAAATGAAAACACAGCCATCAGAAAACGATCGCCTTACAGAGGAGGACTGAGATTCTGGCCTTTGCGGGCCTCTGACACACAAATAGCAAAGTGGCTTTTTTACAAGGATCGACTACTTTCGAGCTATGCCAAAATACAAAGGCGTGAGGATTTGTAAGAAGGAACAATACCAGGTAAACCAGGGCTTTTTGATTCTGGACACCACGAACAACAGAAAACACTGGATCACGAGCTGGACAGAAAAGAAGCAGTActactgatgaaaaaaaaaagcactcgCAAACTGTCTCGCTTAGGCGGTGGAATGGACTATAAAGCCGTCTGTGTCTGAATAAACGCAGATCTACTTGATTTGATTGGAACTTCATTTGGATATCAGATGAAATTGGACATGCTCATTTAAAAATGTGGGACAAGAAATTATTGGAGGAGAAAA
>TCONS_00050331
GCCTGTGGCCATCGCTACATTCGTAACTTCACTAGCAACTTCCGCATGATTGGGAGATGTTATGTTCGGGGAAATGACCTGCAGCTCAACCTTAGTGATTATCAATGGCAGTCGTATGACGAGATTTGCGACCCCCGAGAAGCCCAGAACAGTGAAGGCATGTGTCTGTTAGGGATGTCTGCTGCCGTTACATTCAGTGAGATCTTCTTCGGTGCTCCAGGATGCTTCAACTGGCAAGGTGATGGCAGCTTATTTGCTTATTTCCTTTTATAAATCAAGAAATCACATTTTCTAAATTCCCCTCTAATAATTTTCCATCATACACAGGAAATATATTTTCGAAGTGGCACAACCCTGCGGATGAGTTTCATTTATTGAAAAGCAAGCTTCCAGATTCTAGAAAAGGCAATATTTACATTGGTTACTCAACGATTGTGGACCAAGATGTTCTAGTCAAAGGCAAAGACACAGTGGTAACAGGAGCACCGAGAGACGAAGCAAAAGGATCTGTGATGATGGCTGAAGTTTTGAAAAGCGGTGGCAGTGGAgaagtcaaaataaaagtcactgtcACAGGAGAACAAGTCGGGTCATATTTTGGCAATAGTGTTGCTGTTGTGGACCTTAACAATGATGGGTAAAGGAAGTCttgggcttttgtttttcttccTGCTTAACTTCTGAAAAAGGTCTTGAAACATGTCTGTGTGTTATTCGTACAGTTGGAAGGATCTGATTGTTGGAGCCCCGTTTTATTTTGACCGAAAAATGGACAAAGGTGGTGCAGTATACGTCTACATGAACCAAAACGGATCTTTTCGTAACAAATCTGATGTGGTCCTAACTGGACCCAAGGACTCAGGTTTTGGCATGTCTGTTGTGGCCATTGGTGATGTTAACCAAGATGGCTTCCAAGATTTTGCCGTTGGTGCTCCATATCATAGCACAGGCAGAGTGTCTATATGGACAGGCAGCAAAACTGGCATTTCTCAAGAACCTAGTCAGGTCATTGATGGAAAAGACATCCCAGGTGGAGGATTCCAGACATTTGGCTACTCCATTAGTAGGGGCCTGGATGTGGACAGAAATGGTTACCCAGATATAGCAGTTGGATCATTAGATGACCGTGTGGTCTTGCTCAGATCACGTCCTGTGATTCACTTGAAGAATACTTTCACAGTGACACCGATGGTAATCAACCTTGAAGACTGTGTTGCCTGCATTGAAGCAAAAGTCTGTTTCTCCTACACATACAGCACTGGCACTGCCAGTTCCCAGAAGGCCGTGACTCTTCAATATACGGTGGAGGCCGATCAGCAGTCGTCTAGGAGCCCCCGTGTTAGTTTCCTTGACAACAATAAGGGCAAATACACTGGCAAAATGTCTGTTAATCCGTCTGGAGATTGTCATTCTCTAAAACTCGAGCTGGCGTCCAAAACAATCCAAGACAAAGTGTCTGCGATCATTTTCCAGCTGAGCGTGTCTGTGGTGGATCCTCCTCCCTCAGGCGGAAAGATGCTGGAGGATCTTAGTGCTTTTCCTGTGATCAGCCAGCGAGACGCCTTGACCGGCAGAGCCGAGATTCACATTCAGAAAGCCTGTGGCTTAGACAACAAATGCGAGAGCAACCTTCAGATGACAGCTGCATTCACAGATGAGAAGAACACACCGTTCCTCATGCAGGAAGATCACCAGATTTTCAACTACACCACCGACATAAAGAAGCTGAAGTTGTTAGTGAATGTCTCCAACGTACCATCAGAGGGCAGGAAAGCAGAAGACGCTTACAATGCTATTCTCAATATCACCATTCCAAGCTCACTCAGCTTCTCCAGCCTGAATCCCAAGTTACCATCAaCCCTGAATGGTGATCCATCTTCTGGGGGGTCTTATCTGTTGTGTACACTTGGTGACCCCTTCAaaagcaatcagaggGTGGAGATCGAGATCACGTTTGAAACATCAGGAATTTCAATAGACATGCAGGAGATTGAGACAGAGCTGCAGCTCTCAACGTTGAGTGATCAAAATGATCTACGGCCGCTGTCGAGGGTGCTGTTGGTGGAGTACATCCTACAGCcgctttttaatttaatCCCTTACTTCAGGGCAGAATTCAGTGGCAATGTAGTGGGAGAGTCGGCCATGAAGAGTACCAGTGATATCGGAAGCCCAGTGGAATTCAACATCTCGGTGGACATTTCTGGAAAACCTTTGGGAAATCTGGGCTTTCTGGAAGTGGTCTTTCAGTGGCCTTCTGCCGTGGCTAATGAGAAGTGGCTGCTTTACCTATCAGAGATTCAGATGACGGGAACATCAGAGTCCTTCTGTGTCGCTAAAGGCATCGTAAACCCCCTTAATCTCACAGTGTCAGAGCGTAAGTCTAGGAGGAGGAAAAGAGACGAGGTCTTGTCAGAGTCCAAACTGGCTATGTCGCAGAAAACCCGTCAGGGCCAAAACAAGCCTAGAGAAGTCCTGAACTGCACCAAGGGCACTGCCCGCTGTCAGACCTTCAGCTGCCCTTTGAGCGCAATGAAAACCTCCGCCATGCTTACCGTCAGAGCGCGTGTTTGGAACAGCACCATGCTTGAGGACTACAGAGCTAAAGGAGTGAGTGTGCAAGGCAGTGTCATGCTGActctaaaaacagacaaaaaaaacatcaagatGAACAATAACATCCGTGAGGTACAAATCTCAGAGTTTTCTCTTGCATCCAAGATTCGTTCTTGCATGCATTTAGCATAA

Function

symbol description
itga3a Predicted to act upstream of or within cell adhesion and integrin-mediated signaling pathway. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of integrin complex. Orthologous to human ITGA3 (integrin subunit alpha 3).

GO:

id name namespace
GO:0007229 integrin-mediated signaling pathway biological_process
GO:0007155 cell adhesion biological_process
GO:0008305 integrin complex cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-090805-3 Predicted to act upstream of or within cell adhesion and integrin-mediated signaling pathway. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of integrin complex. Orthologous to human ITGA3 (integrin subunit alpha 3).

Ensembl:

ensembl_id ENSDARG00000037917

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00050330 False 3680 mRNA 0.47 26 34846201 34917041
TCONS_00050331 True 2748 mRNA 0.46 18 34877066 34911590

Neighbor

gene id symbol gene type direction distance location
XLOC_025539 cdk5r1a coding upstream 23881 34821327 ~ 34822320 (+)
XLOC_025538 NA coding upstream 113083 34732869 ~ 34733118 (+)
XLOC_025537 dusp3b coding upstream 157924 34683096 ~ 34688277 (+)
XLOC_025536 dlx4a coding upstream 164780 34670076 ~ 34681421 (+)
XLOC_025535 BX470190.1 coding upstream 486869 34359215 ~ 34359332 (+)
XLOC_025542 ca10b coding downstream 2769 34919810 ~ 34981673 (+)
XLOC_025543 smarce1 coding downstream 68854 34985895 ~ 34995062 (+)
XLOC_025544 prkcbb coding downstream 88021 35005062 ~ 35266060 (+)
XLOC_025545 cacng3b coding downstream 381037 35298078 ~ 35375978 (+)
XLOC_025546 rbbp6 coding downstream 489354 35406395 ~ 35421194 (+)
XLOC_025429 BX649540.1 misc upstream 4597165 30248739 ~ 30249036 (+)
XLOC_025534 NA non-coding upstream 592255 34253557 ~ 34253946 (+)
XLOC_025533 NA non-coding upstream 595958 34249182 ~ 34250243 (+)
XLOC_025530 NA non-coding upstream 628977 34210893 ~ 34217224 (+)
XLOC_025547 NA non-coding downstream 522869 35439910 ~ 35489947 (+)
XLOC_025550 NA non-coding downstream 650461 35567502 ~ 35570748 (+)
XLOC_025552 BX572621.1 non-coding downstream 826143 35743184 ~ 35743256 (+)
XLOC_025553 NA non-coding downstream 832800 35749841 ~ 35750233 (+)
XLOC_025555 NA non-coding downstream 1041637 35958678 ~ 35965512 (+)

Expression


Co-expression Network