XLOC_025537 (dusp3b)


Basic Information

Item Value
gene id XLOC_025537
gene name dusp3b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 34683096 ~ 34688277 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00050328
CCCTCCATGAAGCCTGAAGAACAACACTTTTTATCTGATAAGCTGTTTAACATGACGAGTTATGAAGTGTCTGTTCAACAGCTCAATGATCTGCTGACCGATGAAAATGGAGACTTCTGCATGCCTTCTAAACCTTTTCATGAAGTCTATCCTGGGATACTGCTAGGAAATGAGTCTGCAGCCACAAATGTGACCCGTTTGCTGGAACTAGGAGTGACACACATCCTCAACGCTGCTGAAGGCCAATCAGACATGCATGTGAACACAGATGCAGAGTACTATGCAGATACAGGGATCATCTATCATGGGATACCAGCCTTCGACACTGACCATTTTGACCTCAGCATATATTTTGAAGAAGCTTCTGATTTTATTCAAAGAGCTTTGGAAATGAAAGGGAAAGTGTATGTCCACTGTCAAAAAGGCTACAGTCGTTCAGCTGCTCTGGTCATCGCTCATCTGATGTTGCAGCACAACATGGACGTGCGAGCTGCAGTGGCCACAGTCAGAGAGAAACGAGAAATCGGGCCCAATGATGGATTCCTGCGCCAGCTCTGCCAGCTCAACGACAGGCTGTATgattaaaacctaaataaatcTGTGCTTTCATCATGTACATGTCAGCAATAAGTAAACCATGAACATTCC

Function

symbol description
dusp3b Predicted to enable protein tyrosine phosphatase activity and protein tyrosine/serine/threonine phosphatase activity. Predicted to act upstream of or within protein dephosphorylation. Predicted to be located in cytoplasm. Orthologous to human DUSP3 (dual specificity phosphatase 3).

GO:

id name namespace
GO:0006470 protein dephosphorylation biological_process
GO:0016311 dephosphorylation biological_process
GO:0008138 protein tyrosine/serine/threonine phosphatase activity molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0016791 phosphatase activity molecular_function
GO:0004721 phosphoprotein phosphatase activity molecular_function
GO:0004725 protein tyrosine phosphatase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030616-38 Predicted to enable protein tyrosine phosphatase activity and protein tyrosine/serine/threonine phosphatase activity. Predicted to act upstream of or within protein dephosphorylation. Predicted to be located in cytoplasm. Orthologous to human DUSP3 (dual specificity phosphatase 3).

Ensembl:

ensembl_id ENSDARG00000060130

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00050328 True 648 mRNA 0.45 3 34683096 34688277

Neighbor

gene id symbol gene type direction distance location
XLOC_025536 dlx4a coding upstream 1675 34670076 ~ 34681421 (+)
XLOC_025535 BX470190.1 coding upstream 323764 34359215 ~ 34359332 (+)
XLOC_025534 NA coding upstream 429150 34253557 ~ 34253946 (+)
XLOC_025533 NA coding upstream 432853 34249182 ~ 34250243 (+)
XLOC_025532 znf207a coding upstream 438071 34234029 ~ 34245025 (+)
XLOC_025538 NA coding downstream 44592 34732869 ~ 34733118 (+)
XLOC_025539 cdk5r1a coding downstream 133050 34821327 ~ 34822320 (+)
XLOC_025540 itga3a coding downstream 157924 34846201 ~ 34917041 (+)
XLOC_025541 BX890565.1 coding downstream 222003 34910280 ~ 34910399 (+)
XLOC_025542 ca10b coding downstream 231533 34919810 ~ 34981673 (+)
XLOC_025429 BX649540.1 misc upstream 4434060 30248739 ~ 30249036 (+)
XLOC_025530 NA non-coding upstream 465872 34210893 ~ 34217224 (+)
XLOC_025529 dre-mir-181c non-coding upstream 485325 34197694 ~ 34197771 (+)
XLOC_025547 NA non-coding downstream 751633 35439910 ~ 35489947 (+)
XLOC_025550 NA non-coding downstream 879225 35567502 ~ 35570748 (+)
XLOC_025552 BX572621.1 non-coding downstream 1054907 35743184 ~ 35743256 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000046_05643458_05646109 DUSP3B coding CI01000046 null 5643458 ~ 5646116 (+)