XLOC_025539 (cdk5r1a)


Basic Information

Item Value
gene id XLOC_025539
gene name cdk5r1a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 34821327 ~ 34822320 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00050329
ggcAGATTTCGTATCAAAAGACCCTGTAATAATAAAGGCAACATGGGAACTGTACTCTCAGTCTCCCCAAGCTACCGAAAGGCAGGCCTGTTTGATGAAATACCACCCCCTCTGGCACATTATACAGCTGTGCAGAACAGTAAAAATGCCAAGGACAAGGGTCTGAAACGCCAGTCGCTCATCAATGTCCTCCCATGGAAGCGCATTGTGGCGGCTTCGGCCAAGAGAAAAGGCTCTAAGAAGTTGCCCTCGGGTGACAGTCAAGATGAAGAGTGCGTGGGCACTCTCAACAGCCAAAACCTGAAGAAGTCTCAGTCTTGTGCCAATCTCTCGGGCTTCACCCAGGAGCCGGCTGTAAGCTCCATTCCTACATCAAAAACAACCACCAATGTGACCTCCACCGCAAAGAGGACCCCCATCACTGAATTGGTGGCCCAAGCAACCAATGCTGGCACACCCAAAAGAGTGATCGTGCAGGCTTCCACCTGCGAGCTACTTAGAAATCTGGGCGACTTCTTGTCGCGACGCTGCTACCGGCTGAAGCGATTCTCACCTGCCGAGCCTATTGTCTGGCTTCGTCAGGTGGATCGGTCTCTTCTGCTGCAGGGCTGGCAGGACCAGGGCTTCATCACCCCGGCAAACTTGGTCTTCCTCTATATGCTGTGCCGTGAGGTCATTTCGCCAGAGGTGTCCAGCGAGCGTGAGCTGCAGGCCGAGGTGCTCACTTGCCTCTACCTGTCCTACTCCTACATGGGAAATGAGATTTCCTACCCGCTCAAGCCCTTCCTGGTGGAGATGGACAAGGACGTCTTCTGGAACCGCAGCCTGGACATCATCAACCGCATGAGTGGCAAAATGCTCCAGCTTAATTCTGACCCGCACTACTTTACACAGGTTTTCGCCGACCTGAAAAATGAACGAGAAATAACAATAAGCCAGCTGTGTATTGGCTTGGATCGATAAGATGGCCGCTTGTGCATAGACAAAATAACtg

Function

symbol description
cdk5r1a Predicted to enable cyclin-dependent protein serine/threonine kinase activator activity and kinase activity. Acts upstream of or within intrahepatic bile duct development. Predicted to be located in plasma membrane. Predicted to be part of protein kinase 5 complex. Human ortholog(s) of this gene implicated in Alzheimer's disease. Orthologous to human CDK5R1 (cyclin dependent kinase 5 regulatory subunit 1).

GO:

id name namespace
GO:0035622 intrahepatic bile duct development biological_process
GO:0016310 phosphorylation biological_process
GO:0016533 protein kinase 5 complex cellular_component
GO:0016740 transferase activity molecular_function
GO:0061575 cyclin-dependent protein serine/threonine kinase activator activity molecular_function
GO:0016301 kinase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-080723-17 Predicted to enable cyclin-dependent protein serine/threonine kinase activator activity and kinase activity. Acts upstream of or within intrahepatic bile duct development. Predicted to be located in plasma membrane. Predicted to be part of protein kinase 5 complex. Human ortholog(s) of this gene implicated in Alzheimer's disease. Orthologous to human CDK5R1 (cyclin dependent kinase 5 regulatory subunit 1).

Ensembl:

ensembl_id ENSDARG00000037916

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00050329 True 994 mRNA 0.52 1 34821327 34822320

Neighbor

gene id symbol gene type direction distance location
XLOC_025538 NA coding upstream 88209 34732869 ~ 34733118 (+)
XLOC_025537 dusp3b coding upstream 133050 34683096 ~ 34688277 (+)
XLOC_025536 dlx4a coding upstream 139906 34670076 ~ 34681421 (+)
XLOC_025535 BX470190.1 coding upstream 461995 34359215 ~ 34359332 (+)
XLOC_025534 NA coding upstream 567381 34253557 ~ 34253946 (+)
XLOC_025540 itga3a coding downstream 23881 34846201 ~ 34917041 (+)
XLOC_025541 BX890565.1 coding downstream 87960 34910280 ~ 34910399 (+)
XLOC_025542 ca10b coding downstream 97490 34919810 ~ 34981673 (+)
XLOC_025543 smarce1 coding downstream 163575 34985895 ~ 34995062 (+)
XLOC_025544 prkcbb coding downstream 182742 35005062 ~ 35266060 (+)
XLOC_025429 BX649540.1 misc upstream 4572291 30248739 ~ 30249036 (+)
XLOC_025533 NA non-coding upstream 571084 34249182 ~ 34250243 (+)
XLOC_025530 NA non-coding upstream 604103 34210893 ~ 34217224 (+)
XLOC_025547 NA non-coding downstream 617590 35439910 ~ 35489947 (+)
XLOC_025550 NA non-coding downstream 745182 35567502 ~ 35570748 (+)
XLOC_025552 BX572621.1 non-coding downstream 920864 35743184 ~ 35743256 (+)
XLOC_025553 NA non-coding downstream 927521 35749841 ~ 35750233 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000046_05756222_05757145 CDK5R1A coding CI01000046 null 5756030 ~ 5757489 (+)