XLOC_025536 (dlx4a)


Basic Information

Item Value
gene id XLOC_025536
gene name dlx4a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 34670076 ~ 34681421 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00050327
CGACGCTGTTGAGATGAAGTTCTCAGACTTCACACACGGCCAAAACGAAAGCAAACGCACCAGCCCCACGGACATGGATCTCTTTGATGGCCCTCTTTAAGAGATGGAAATTACATGACTTCTAAATAGATGCCACTTTTATGGTGCACCGGTCTAATGGACATAACTCTAAAACATGACTATGACTTCATTGTCTGAAAGTTTGGAGGCTTCAGATCCCTCAAAGTCGGCTTTTCTGGAGTTCAGTCACGGTTACCAGTCTCACCAGCAGCATTCACCCGGTGTGTCTCACGCGCACTATCCGGTGCACGGTTTGCATCAAGGCGCGCATTCGCAATACGACGCGGCCTTCTCTCCTGGCGCTGCGTCTTACAGCCGTCCACTCGCTTACCACTATTCCACCGCACACCACCATCCAGGAGCTTACCTACCCTATCAACACAACAGCGCAGTCGGATATTCAAGAGTTGAGGATGCAGATTCCGAGAAGCAAAGTTCCATTGAAAGTGGAGAAATACGGCTGAACGGGAAGGGGAAGAAGATTCGCAAACCGCGCACGATTTACTCGAGCTTACAGCTGCAGGCGCTCAACCAGCGCTTCCAGCAAACCCAGTACCTCGCGCTGCCCGAACGCGCTGATCTGGCGGCTAAACTGGGTCTGACACAAACACAGGTCAAGATATGGTTCCAGAACAAGCGTTCCAAGTACAAAAAGATCATGAAACATGGCTCAAGTGGACCTGAAGGAGAACACCTTCAAGCAGCGTCTGCTTCAGGAGCCCCATGTTCACCAGGCATGCCACCCCTATGGGATGTTTCCATGCCCAGCAAAGGTGCTCCCATCCACTCTGGAGGATATATGAACTCTTTCGGACACTGGTACTCGGGTCATCATCAAGACCCAATGGCCAGAACTCAGATGATGTGATGGGACGTTTAGAACAATCTACAGTGTTTCCACGTCCCATCTACTGATTCCAGCAGTTCACACCAGCACTCTTTAGCACTGCGTACTCCGCCAAACATCCTTCCCAGTATTTTCCTCATAAAGATTTACATTGCTGACATTTTGGTTTATTTGCTTGCAGGTTTTTGtggtggatttaaaaaaaaaagactgaataaACAGCCTAACCTGAACTTGGATTTTTGTATGTTCTTGTAAATTTGAATAAAATGCCTTTGTCTGATTGTC

Function

symbol description
dlx4a Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in cell differentiation and negative regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be located in nucleus. Is expressed in gill and head. Human ortholog(s) of this gene implicated in orofacial cleft 15. Orthologous to human DLX4 (distal-less homeobox 4).

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0030154 cell differentiation biological_process
GO:0007275 multicellular organism development biological_process
GO:0000122 negative regulation of transcription by RNA polymerase II biological_process
GO:0009790 embryo development biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-980526-73 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in cell differentiation and negative regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be located in nucleus. Is expressed in gill and head. Human ortholog(s) of this gene implicated in orofacial cleft 15. Orthologous to human DLX4 (distal-less homeobox 4).

Ensembl:

ensembl_id ENSDARG00000011956

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00050327 True 1195 mRNA 0.48 3 34670076 34681421

Neighbor

gene id symbol gene type direction distance location
XLOC_025535 BX470190.1 coding upstream 310744 34359215 ~ 34359332 (+)
XLOC_025534 NA coding upstream 416130 34253557 ~ 34253946 (+)
XLOC_025533 NA coding upstream 419833 34249182 ~ 34250243 (+)
XLOC_025532 znf207a coding upstream 425051 34234029 ~ 34245025 (+)
XLOC_025531 slc25a23b coding upstream 439511 34220194 ~ 34230565 (+)
XLOC_025537 dusp3b coding downstream 1675 34683096 ~ 34688277 (+)
XLOC_025538 NA coding downstream 51448 34732869 ~ 34733118 (+)
XLOC_025539 cdk5r1a coding downstream 139906 34821327 ~ 34822320 (+)
XLOC_025540 itga3a coding downstream 164780 34846201 ~ 34917041 (+)
XLOC_025541 BX890565.1 coding downstream 228859 34910280 ~ 34910399 (+)
XLOC_025429 BX649540.1 misc upstream 4421040 30248739 ~ 30249036 (+)
XLOC_025530 NA non-coding upstream 452852 34210893 ~ 34217224 (+)
XLOC_025529 dre-mir-181c non-coding upstream 472305 34197694 ~ 34197771 (+)
XLOC_025547 NA non-coding downstream 758489 35439910 ~ 35489947 (+)
XLOC_025550 NA non-coding downstream 886081 35567502 ~ 35570748 (+)
XLOC_025552 BX572621.1 non-coding downstream 1061763 35743184 ~ 35743256 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000046_05635252_05642052 DLX4A coding CI01000046 null 5633771 ~ 5642292 (+)
bowfin (Amia calva) G8188 NA non-coding CM030121.1 CM030121.1 49582118 ~ 49586095 (+)