CI01000046_05635252_05642052 (DLX4A)


Basic Information

Item Value
gene id CI01000046_05635252_05642052
gene name DLX4A
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000046
NCBI id null
chromosome length 7063170
location 5633771 ~ 5642292 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000046_05635252_05642052.mRNA
CCATTAAAGGACAGGTTTCTGCATTGTAAGAATCGGCAGGCATCGAGGCTGGGCGTGTCGTGACGGTTAGTCGTACCTGTCTGTTGATGACTTGAGGAATGTTGGCACAAGATAAAAGCATCTATAGCCTAATTTGTGTAATTCTCTCCTCACGACACTATTTTGGTTTAATAACACGTGCCCTTCAACCAAAACATGTAACAACATTGTGCATCAATAGCGGCTCTTTTCAACTTTCCTCCTCTCAACCACGATAAAAATGAGTTTCAACGGAAATCAAACTACGCGGATTAATTAGCCGTGGGATGCTGCAATCATTCCATCTTTGTCTTGTCTATCCTTATTAAATAAAAATTTGTTTGAATACTATTAAACTGTTTGACTAAAATAACAGAATCGGATTTAGACACTTCTGTCGAAACTGCACTAAAAAGTTAACGCTAGTAATTTTAACGAAAAATAGCCTACTAAATCATCTTACCATCATAGTTGCTATATATATATATAGGCTATAGCCTATATATTATAGTAAAATATTTGTATAAACTAATAAAATACATATTGTTTGGAGATAGGCTACAAAATTTTGAATTAGGTCTAATTTACAAAGAATAGAAAAATATTGTTGAAATTATGTTCAAGTAAAAAGTAGTAGGCCTATAGTCTGATACGTTTTAGAAGTTAAAAAAAAGAAAAAAGAAAAAAGAATAGCGTTTTTATTTTTATTCTGATCTCATATTTTTTTATAGCCCAGTTTTGGTTAAATCCAGCTAATCATGTGGCTTTCCATTGGCTATCACTTGTGTTATTCTCGGTGTAAACAGACTTTATTATCAGTAAGGTTAATATGATATTGAATGACATATAGCCTAAATGACTGTACAGTCCTATAGTCTATATGCTATTTATTTCTCTTTATTTAACAACGATATATTTATGGCAACCGCATTTGTCAGGCATTTAGAATGACATTTTTGACCACATACATAGCATGGATCTGATTATTTGTTATGAATCTTTACCGACATGGTCTGGGTTAGAGTTTGTATTTTTGAGAACAGTTTCCTTTCTTTCTTTCACACTAAACATAATGGTATTAGTCCAACGAAGCAAACGTTTGATATTTAAATCTTAGTGATAGGCTACATCAAAAACCATTGCTGCAAACGTGGGAATTGCGATGCCCCGTACATATTACACTATTGACGTCACTGCTTCTAAAGAAATGAGGCGGACGGCGCATGCAGCCAATAAGAGAGCGCGATCTCACTGCTGGAATCAAATCCAGTATGTGATGGGAGTGTTGAGATGAACTTCACAGACCTCATACACTGCCAAAACGAAAGCAAACTCATGCGCCTCGCGTTTTCACGGACATGGATCTCTCTAATGGACCTCTTTAATGGATGGAAATCACATGACTCTTCTAAATAGATGCTACTTTTATGGTGCACCGGTCTAATGGACATGACTCTAAAAAAATGACTATGACTTCACTGTCTGAAAGTTTGGTGGCTTCAGACCCTTCAAAATCGGCATTTCTGGAGTTCAGTCACGGTTACCAGTCTCACCAGCAGCATTCACCCGGCGTGTCTCACGCGCACTATCCGGTGCACGGTTTGCATCAAGGCGCACATTCGCAGTACGATGCGGCCTTCTCTTCTGGCGCTGCTTCGTACGGCCGTCCGCTCACTTACCACTATCCCAGTGCCCATCACCACCCCGGAGCTTACCTACCCTATCAACACAACAGCGCAGTCGGCCATTCAAGAGTAGATGATGCAGATTCCGAGAAGCAAAGTTCCATTGAAAGTGGAGAAATACGCCTGAACGGGAAGGGGAAAAAGATTCGCAAACCCCGCACAATCTACTCGAGCTTACAGCTTCAGGCGCTCAACCAGCGCTTCCAGCAGACCCAGTACCTCGCGCTGCCTGAACGCGCTGATCTGGCCGCCAAACTGGGTCTGACACAAACACAGGTAAAGATATGGTTCCAGAACAAGCGTTCCAAGTACAAAAAGATAATGAAGCACGGCTCAAGCGGACCGGAAGGAGAACACCTTCAAGCAGCCTCTGCCTCCGGACCACCATGTTCACCAGGAATGCCGCCCCTGTGGGATGTTTCCATGTCAACCAAAGGTGCCCCCATCCACTCTGGAGGATATATGAACTCTTTTGGACACTGGTACCCTGGTCATCATCATCAAGACCCAATGGCCAGAACTCAGATGATGTGATGGCGGTTTAGGACAGTCTACAGAGTATCCAGATCCCCTCTACTGATTCACACCAGCACTCTTTAGCACTGTTTACTCACAGCCAAACTTTCTTCAAGTTCCTCCCCAGTATTTTCGTCATGGAGATTTACATTGCTGACTTTTATTTTCTTTGCTTGCAGGTTTTTGTGGTGGATTTTTAAAAGACGGAAATAAGCAACCTTACCTAAACTTGGATTTTGTAAACTCTTGTAAATTTTA

Function

symbol description
dlx4a Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in cell differentiation and negative regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be located in nucleus. Is expressed in gill and head. Human ortholog(s) of this gene implicated in orofacial cleft 15. Orthologous to human DLX4 (distal-less homeobox 4).

NR:

description
Distal-less homeobox gene 4a

GO:

id name namespace
GO:0043565 sequence-specific DNA binding molecular_function

KEGG:

id description
K09314 DLX1_4_6; homeobox protein DLX1/4/6

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000046_05635252_05642052.mRNA True 2477 mRNA 0.41 3 5633771 5642292

Neighbor

gene id symbol gene type direction distance location
CI01000046_05562155_05568637 MLX coding upstream 64308 5561957 ~ 5569463 (+)
CI01000046_05481838_05537970 NA coding upstream 95620 5481838 ~ 5538151 (+)
CI01000046_05392316_05401559 ARF3A, ARF2B, ARF1L, ARF3, ARF2, ARF1, ARF3.S, ARF5, ARF2A, ARF5.L coding upstream 231696 5391983 ~ 5402075 (+)
CI01000046_05335886_05341205 GPATCH8 coding upstream 291883 5335886 ~ 5341888 (+)
CI01000046_05315583_05316990 NA coding upstream 316682 5315185 ~ 5317089 (+)
CI01000046_05643458_05646109 DUSP3B coding downstream 1166 5643458 ~ 5646116 (+)
CI01000046_05686868_05688748 NA coding downstream 42246 5684538 ~ 5689380 (+)
CI01000046_05756222_05757145 CDK5R1A coding downstream 113738 5756030 ~ 5757489 (+)
CI01000046_05775279_05805016 NA coding downstream 132987 5775279 ~ 5805114 (+)
CI01000046_05808927_05820706 NA coding downstream 165328 5807557 ~ 5820759 (+)
G197410 NA non-coding upstream 8265 5587181 ~ 5625506 (+)
G197466 NA non-coding upstream 242419 5391122 ~ 5391352 (+)
G197399 NA non-coding upstream 247055 5386470 ~ 5386716 (+)
G197383 NA non-coding upstream 249472 5381121 ~ 5384299 (+)
G197391 NA non-coding upstream 307573 5289001 ~ 5326198 (+)
G197417 NA non-coding downstream 13287 5655579 ~ 5665352 (+)
G197529 NA non-coding downstream 74064 5716356 ~ 5719969 (+)
G197355 NA non-coding downstream 101277 5743569 ~ 5746418 (+)
G197377 NA non-coding downstream 164194 5806486 ~ 5807376 (+)
G197352 NA other upstream 357318 5259318 ~ 5276453 (+)
G196869 NA other upstream 1212084 4415530 ~ 4421687 (+)
G197121 NA other upstream 1262341 4371011 ~ 4371430 (+)
G197055 NA other upstream 1483991 4149423 ~ 4149780 (+)
CI01000046_03943890_03945302 ATP5J2 other upstream 1688271 3943794 ~ 3945500 (+)
G197528 NA other downstream 83829 5726121 ~ 5742684 (+)
CI01000046_06808895_06820945 GSPT1, ERF3B, GSPT1L other downstream 1177646 6808507 ~ 6821543 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_025536 dlx4a coding NC_007114.7 CM002887.2 34670076 ~ 34681421 (+)
bowfin (Amia calva) G8188 NA non-coding CM030121.1 CM030121.1 49582118 ~ 49586095 (+)